Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)
☆22Jan 15, 2023Updated 3 years ago
Alternatives and similar repositories for WAT3R
Users that are interested in WAT3R are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem☆21Apr 14, 2025Updated last year
- Using TCR and expression for sequence embedding☆63Jan 6, 2026Updated 7 months ago
- Clonotype Neighbor Graph Analysis☆100Jun 15, 2026Updated last month
- ☆12May 11, 2024Updated 2 years ago
- Scripts to reproduce the analysis of the MAESTER paper (https://www.nature.com/articles/s41587-022-01210-8).☆14May 18, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Survival Analysis for Protein-Level TCGA Analysis☆12Nov 30, 2018Updated 7 years ago
- Single-cell immune repertoire trajectory analysis in R☆12Aug 8, 2025Updated last year
- ☆15Jul 16, 2026Updated 3 weeks ago
- Single-cell Consensus Clusters of Encoded Subspaces☆15Jul 27, 2026Updated 2 weeks ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆115Dec 18, 2025Updated 7 months ago
- Mapping the Functional Landscape of TCR Repertoire☆36Oct 8, 2021Updated 4 years ago
- flexible CDR based distance metrics☆75Dec 16, 2025Updated 7 months ago
- Pipeline for harmonising immunological receptor–epitope interactions☆16Aug 3, 2026Updated last week
- Flexible, probablistic metrics for quality control of scRNA-seq data☆22May 27, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Integrative analysis for scRNA-seq and scTCR-/scBCR-seq data☆22Updated this week
- Normalize CITEseq Data☆71Nov 9, 2025Updated 9 months ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆33Jan 30, 2026Updated 6 months ago
- COMET Single-Cell Marker Detection tool☆34Jun 21, 2022Updated 4 years ago
- code repository for Lagattuta et al. "Repertoire analyses reveal T cell receptor sequence features that influence T cell fate." Nat. Imm.…☆14Jan 28, 2025Updated last year
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆24Jan 16, 2024Updated 2 years ago
- A toolkit for single-cell immune profiling☆374Jul 9, 2026Updated last month
- ☆17Jun 17, 2021Updated 5 years ago
- Matching T-cell receptor repertoires to a database of antigen specificities☆39Jul 30, 2026Updated 2 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- R package for semi-supervised single-cell data integration☆101Jan 27, 2026Updated 6 months ago
- processes GoT amplicon data and generates a table of metrics☆32Jun 24, 2022Updated 4 years ago
- Analysis of cell-cell communication at single-cell resolution☆107Sep 10, 2024Updated last year
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆121Sep 16, 2025Updated 10 months ago
- VDJ Clonotyping & Analysis Tools☆50Mar 7, 2025Updated last year
- A Grammar of Data Manipulation for Omics Data☆21Aug 31, 2020Updated 5 years ago
- Scalable, downsampling-free automated cell-population discovery, feature engineering, classification and visualization of single-cell (mo…☆12Aug 30, 2021Updated 4 years ago
- Summary statistics for repertoires☆17Feb 1, 2023Updated 3 years ago
- software to detect doublets☆98Dec 28, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- R package for single-cell comparative regulatory analysis☆12Jun 26, 2021Updated 5 years ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆66Mar 31, 2022Updated 4 years ago
- scLearn:Learning for single cell assignment☆35Dec 13, 2024Updated last year
- ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods☆13Jan 10, 2024Updated 2 years ago
- Ensemble Learning for Harmonization and Annotation of Single Cells (ELeFHAnt) provides an easy to use R package for users to annotate clu…☆24Jul 18, 2022Updated 4 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆20May 24, 2021Updated 5 years ago
- Quantifying experimental perturbations at single cell resolution☆116Sep 27, 2024Updated last year