Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)
☆21Jan 15, 2023Updated 3 years ago
Alternatives and similar repositories for WAT3R
Users that are interested in WAT3R are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem☆21Apr 14, 2025Updated 11 months ago
- Using TCR and expression for sequence embedding☆62Jan 6, 2026Updated 2 months ago
- Clonotype Neighbor Graph Analysis☆95Feb 12, 2026Updated last month
- Scripts to reproduce the analysis of the MAESTER paper (https://www.nature.com/articles/s41587-022-01210-8).☆12May 18, 2024Updated last year
- Survival Analysis for Protein-Level TCGA Analysis☆11Nov 30, 2018Updated 7 years ago
- Single-cell immune repertoire trajectory analysis in R☆11Aug 8, 2025Updated 7 months ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆106Dec 18, 2025Updated 3 months ago
- ☆11May 11, 2024Updated last year
- Mapping the Functional Landscape of TCR Repertoire☆36Oct 8, 2021Updated 4 years ago
- ☆14Oct 16, 2025Updated 5 months ago
- flexible CDR based distance metrics☆71Dec 16, 2025Updated 3 months ago
- Integrative analysis for scRNA-seq and scTCR-/scBCR-seq data☆20Mar 16, 2026Updated last week
- Single-cell Consensus Clusters of Encoded Subspaces☆14Aug 14, 2023Updated 2 years ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆21Jan 4, 2023Updated 3 years ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆33Jan 30, 2026Updated last month
- Single-cell Mutual Information-based Network Engineering Ranger☆23Aug 28, 2025Updated 6 months ago
- COMET Single-Cell Marker Detection tool☆32Jun 21, 2022Updated 3 years ago
- A toolkit for single-cell immune profiling☆366Mar 9, 2026Updated 2 weeks ago
- R package for semi-supervised single-cell data integration☆97Jan 27, 2026Updated last month
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆39Feb 23, 2026Updated last month
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆24Jan 16, 2024Updated 2 years ago
- An R library for conducting analyses on COMPASS data.☆16Jun 10, 2021Updated 4 years ago
- A Grammar of Data Manipulation for Omics Data☆21Aug 31, 2020Updated 5 years ago
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆122Sep 16, 2025Updated 6 months ago
- code repository for Lagattuta et al. "Repertoire analyses reveal T cell receptor sequence features that influence T cell fate." Nat. Imm.…☆14Jan 28, 2025Updated last year
- processes GoT amplicon data and generates a table of metrics☆32Jun 24, 2022Updated 3 years ago
- Summary statistics for repertoires☆17Feb 1, 2023Updated 3 years ago
- software to detect doublets☆97Dec 28, 2024Updated last year
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆63Mar 31, 2022Updated 3 years ago
- VDJ Clonotyping & Analysis Tools☆50Mar 7, 2025Updated last year
- Quantifying experimental perturbations at single cell resolution☆113Sep 27, 2024Updated last year
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Oct 28, 2019Updated 6 years ago
- spatial transcriptome, single cell☆74Mar 18, 2023Updated 3 years ago
- iCellR is an interactive R package designed to facilitate the analysis and visualization of high-throughput single-cell sequencing data. …☆128Nov 10, 2025Updated 4 months ago
- Interpretation of cell states using reference single-cell maps☆313Dec 19, 2025Updated 3 months ago
- Single Cell Consensus Clustering with Speed☆21Dec 12, 2022Updated 3 years ago
- a fully Bayesian approach to deconvolve tumor microenvironment☆60Jun 20, 2022Updated 3 years ago
- Human brain, >200,000 nuclei☆24Jun 17, 2021Updated 4 years ago
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Nov 8, 2018Updated 7 years ago