BlishLab / scriabin
Analysis of cell-cell communication at single-cell resolution
☆100Updated 6 months ago
Alternatives and similar repositories for scriabin:
Users that are interested in scriabin are comparing it to the libraries listed below
- ☆59Updated 5 years ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆78Updated last year
- Coarse-graining of large single-cell RNA-seq data into metacells☆75Updated 7 months ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆62Updated 3 years ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆66Updated 2 weeks ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆97Updated last year
- R package for pathway analysis in scRNA-seq data☆72Updated 7 months ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆52Updated 6 months ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆93Updated last year
- Efficient and precise single-cell reference atlas mapping with Symphony☆103Updated 2 years ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆106Updated last month
- A tool for semi-automatic cell type harmonization and integration☆102Updated last week
- Functional Inference of Gene Regulation☆41Updated 8 months ago
- ☆49Updated 6 months ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆84Updated 9 months ago
- A tool for removing doublets from single-cell RNA-seq data☆73Updated 4 years ago
- R package for semi-supervised single-cell data integration☆80Updated last week
- ☆50Updated 6 months ago
- ☆104Updated 3 weeks ago
- Aligning gene expression trajectories of single-cell reference and query systems☆62Updated 5 months ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆62Updated 2 years ago
- ☆61Updated last year
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆59Updated 9 months ago
- ☆60Updated 4 years ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆68Updated last week
- Publication Page for Satpathy*, Granja* et al 2019☆92Updated 4 years ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆69Updated 2 months ago
- Single Cell Cluster Evaluation☆93Updated 3 years ago
- Framework for sensitive DE testing (using neighbourhoods)☆64Updated 8 months ago