BlishLab / scriabinLinks
Analysis of cell-cell communication at single-cell resolution
☆105Updated last year
Alternatives and similar repositories for scriabin
Users that are interested in scriabin are comparing it to the libraries listed below
Sorting:
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆114Updated 8 months ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆85Updated 2 years ago
- R package for semi-supervised single-cell data integration☆94Updated 3 weeks ago
- ☆64Updated 6 years ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated 2 years ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆72Updated 4 years ago
- R package for pathway analysis in scRNA-seq data☆77Updated last year
- ☆60Updated last week
- ☆127Updated 3 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆80Updated 5 months ago
- R package for Protein activity analysis of single-cell RNAseq.☆85Updated 3 years ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆135Updated 5 months ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆63Updated 3 years ago
- ☆41Updated 4 years ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆78Updated 5 months ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆80Updated 11 months ago
- A tool for semi-automatic cell type harmonization and integration☆117Updated 2 months ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆113Updated 2 months ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆78Updated 3 weeks ago
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆68Updated last year
- Functional Inference of Gene Regulation☆49Updated last year
- Direct estimation of mean and covariance from single cell RNA seq experiments☆126Updated 8 months ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆88Updated 3 years ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆83Updated 9 months ago
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆119Updated 2 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆94Updated 7 months ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆91Updated 3 weeks ago
- R package for Pathway RespOnsive GENe activity inference☆113Updated 2 years ago
- Single Cell Cluster Evaluation☆98Updated 4 years ago
- Gene group activity utility functions for Scanpy☆99Updated last year