nixonlab / stellarscopeLinks
Single-cell Transposable Element Locus Level Analysis of scRNA Sequencing
☆13Updated 3 weeks ago
Alternatives and similar repositories for stellarscope
Users that are interested in stellarscope are comparing it to the libraries listed below
Sorting:
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆17Updated 3 months ago
- interactive visualization of single-cell transcriptomes☆11Updated last year
- ☆32Updated 5 months ago
- ☆32Updated last year
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆28Updated 3 months ago
- ☆49Updated 11 months ago
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆20Updated last year
- ☆29Updated 9 months ago
- ☆17Updated last year
- A robust and accurate cell type classifier for single cell RNA-seq data☆16Updated 2 years ago
- single-cell clustering based on alternative splicing landscapes☆21Updated last year
- Functional Inference of Gene Regulation☆45Updated last year
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated 2 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- A count based method for detecting doublets from single nucleus ATAC-seq (snATAC-seq) data.☆31Updated 2 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆50Updated 11 months ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆30Updated 2 years ago
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆75Updated 3 months ago
- ☆22Updated last year
- ☆33Updated 6 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 9 months ago
- Single cell RNA-seq analysis bundle☆35Updated 5 years ago
- ☆35Updated last year
- Single Cell Analysis of Five'Ends☆50Updated last year
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆25Updated last year
- ☆39Updated 3 years ago
- scWGCNA☆61Updated 2 years ago
- Analysis of Paired-Tag datasets☆42Updated last year
- ☆47Updated 6 months ago