Core-Bioinformatics / ClustAssessLinks
Tools for assessing clustering robustness
☆28Updated 3 weeks ago
Alternatives and similar repositories for ClustAssess
Users that are interested in ClustAssess are comparing it to the libraries listed below
Sorting:
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆39Updated last week
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆22Updated last year
- R package for Flexible dot plots☆29Updated 3 years ago
- ☆25Updated 3 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆44Updated 4 months ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆38Updated 2 years ago
- A clusterability measure for scRNA-seq data.☆18Updated 3 years ago
- ☆29Updated 2 years ago
- cross-species analysis of cell identities, markers and regulations☆12Updated 6 months ago
- ☆23Updated 3 months ago
- An R package for visualising cell-cell interactions☆45Updated last year
- scover☆24Updated 2 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 4 years ago
- Trans-association between HLA and TCR-CDR3☆19Updated 2 years ago
- ANS_signature_scoring: A gene expression signature scoring Python package.☆16Updated 3 months ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆32Updated 9 months ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated last year
- Code to reproduce TNBC analysis and figures☆25Updated 3 years ago
- This repository contains HCA Benchmarking codes☆26Updated 6 years ago
- ☆20Updated 2 years ago
- ☆23Updated last year
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆38Updated 2 months ago
- Bead-based single-cell atac processing☆33Updated 4 years ago
- ☆12Updated 4 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 4 years ago
- Human brain, >200,000 nuclei☆23Updated 4 years ago
- Gene Expression Decomposition and Integration☆19Updated 10 months ago
- Inferring gene co-expression networks from single cell gene expression data☆28Updated 3 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Updated 5 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆26Updated 5 years ago