Core-Bioinformatics / ClustAssess
Tools for assessing clustering robustness
☆23Updated 3 weeks ago
Alternatives and similar repositories for ClustAssess
Users that are interested in ClustAssess are comparing it to the libraries listed below
Sorting:
- A clusterability measure for scRNA-seq data.☆18Updated 3 years ago
- ☆20Updated last year
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆25Updated 3 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- Scripts to install as a Bioconda package for making workflows☆18Updated 8 months ago
- ☆22Updated 11 months ago
- ☆31Updated 3 months ago
- ☆15Updated 3 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆15Updated 2 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆42Updated last year
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆36Updated last week
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆31Updated last month
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 6 months ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆33Updated 3 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated 11 months ago
- Vaeda method for computational doublet annotation☆16Updated 10 months ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago
- Landscape Single Cell Entropy☆19Updated 4 years ago
- Analysis notebooks and data for AML hierarchies paper☆16Updated last year
- Analyzing chromatin accessibility data in R☆18Updated last year
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆28Updated 3 years ago
- represent each cell in UMAP plots as a pie chart☆16Updated 3 years ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆29Updated 8 months ago
- R package for Flexible dot plots☆29Updated 2 years ago
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- GLASS consortium☆13Updated 2 years ago
- Advanced steps of the OSCA book☆13Updated last month