TobiTekath / DTUrtleLinks
Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:
☆20Updated last year
Alternatives and similar repositories for DTUrtle
Users that are interested in DTUrtle are comparing it to the libraries listed below
Sorting:
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- RNA editing tests☆17Updated 5 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆26Updated last year
- splicekit: an integrative toolkit for splicing analysis from short-read RNA-seq☆19Updated 3 weeks ago
- ☆51Updated last year
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆20Updated 3 weeks ago
- ☆32Updated last year
- Tutorial Website☆60Updated 4 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- binned motif enrichment analysis and visualisation☆43Updated 3 weeks ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆62Updated last month
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆54Updated 4 years ago
- SEASTAR - Systematic Evaluation of Alternative transcription STArt site in RNA☆14Updated 7 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 3 years ago
- SingleCell Nanopore sequencing data analysis☆61Updated 5 months ago
- An R package to time somatic mutations☆64Updated 4 years ago
- Next-Gen Sequencing tools from the Horvath Lab☆44Updated 2 months ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- A list of alternative splicing analysis resources☆46Updated 7 months ago
- An Integrated Analysis Pipeline for Unbiased ChIP seq Analysis☆22Updated last year
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆52Updated 2 years ago
- Single-Cell Omics for Transcriptome CHaracterization (SCOTCH): isoform-level characterization of gene expression through long-read single…☆16Updated last month
- ☆34Updated this week
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- Pipeline for Cut&Tag analysis☆24Updated 7 months ago
- Peak caller for CUT&TAG data☆29Updated 3 years ago
- Tools for detecting alternative splicing events and genotype in single-cell gene expression data.☆15Updated last year
- simplified cellranger for long-read data☆19Updated 2 months ago