TobiTekath / DTUrtleLinks
Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:
☆21Updated last year
Alternatives and similar repositories for DTUrtle
Users that are interested in DTUrtle are comparing it to the libraries listed below
Sorting:
- splicekit: an integrative toolkit for splicing analysis from short-read RNA-seq☆20Updated 2 months ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- An R package to time somatic mutations☆65Updated 5 years ago
- RNA editing tests☆17Updated 5 years ago
- Tutorial Website☆63Updated 5 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- ATAC-seq processing pipeline☆34Updated 3 years ago
- Genomic coordinates of problematic genomic regions as GRanges☆51Updated 2 months ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆57Updated 4 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆26Updated last year
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆41Updated 3 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 3 years ago
- binned motif enrichment analysis and visualisation☆45Updated 2 weeks ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆63Updated 2 months ago
- ☆54Updated last year
- snakemake workflow for post-processing scATACseq data☆22Updated 5 years ago
- Next-Gen Sequencing tools from the Horvath Lab☆45Updated last month
- Pipeline for Cut&Tag analysis☆25Updated 9 months ago
- scisorseqr is an R-package for processing of single-cell long read data and analyzing differential isoform expression across any two cond…☆43Updated 2 years ago
- ☆33Updated last year
- Peak caller for CUT&TAG data☆30Updated 3 years ago
- Full-length transcriptome splicing and mutation analysis☆86Updated last year
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆53Updated 2 years ago
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- Scripts to import your FeatureCounts output into DEXSeq☆34Updated 7 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- Single-Cell Omics for Transcriptome CHaracterization (SCOTCH): isoform-level characterization of gene expression through long-read single…☆18Updated last month
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆46Updated last year