TobiTekath / DTUrtleLinks
Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:
☆20Updated last year
Alternatives and similar repositories for DTUrtle
Users that are interested in DTUrtle are comparing it to the libraries listed below
Sorting:
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆24Updated 10 months ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- simplified cellranger for long-read data☆19Updated last month
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆15Updated 3 years ago
- ☆49Updated 10 months ago
- interactive visualization of single-cell transcriptomes☆11Updated last year
- ☆31Updated 4 months ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆22Updated 6 months ago
- ☆20Updated last year
- ☆32Updated 11 months ago
- ☆21Updated 5 years ago
- CLIP-seq Analysis of Multi-mapped reads☆30Updated 3 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆33Updated 2 years ago
- splicekit: an integrative toolkit for splicing analysis from short-read RNA-seq☆17Updated 2 months ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆30Updated 2 years ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆17Updated 2 months ago
- Main repository for Drews et al. (Nature, 2022)☆41Updated last year
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated last year
- Snakemake pipeline for running MAJIQ☆23Updated last year
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- snakemake workflow for post-processing scATACseq data☆21Updated 4 years ago
- Use an ensemble of variant callers to call variants from ATAC-seq data☆23Updated 3 weeks ago
- An R package to analyze single-cell V(D)J data☆28Updated last year
- Annotation and segmentation of MAS-seq data☆20Updated 2 years ago
- Detection of differential translated genes using Ribo-seq☆16Updated 4 years ago
- Cellsnake tool main repo☆34Updated last year
- ☆22Updated 11 months ago
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆23Updated 2 years ago
- RiboPlotR package for Ribo-plot☆15Updated last year