chenweng1991 / redeemRLinks
R package for ReDeeM: single-cell Regulatory multi-omics with Deep Mitochondrial mutation profiling.
☆17Updated 2 months ago
Alternatives and similar repositories for redeemR
Users that are interested in redeemR are comparing it to the libraries listed below
Sorting:
- ☆32Updated 10 months ago
- SNV calling from single cell sequencing☆118Updated last year
- ☆52Updated last year
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆58Updated last month
- Analysis of Paired-Tag datasets☆43Updated last year
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆20Updated this week
- ☆18Updated last year
- Single Cell Analysis of Five'Ends☆50Updated last year
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆32Updated last week
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- single-cell clustering based on alternative splicing landscapes☆23Updated last year
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆81Updated 3 years ago
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆24Updated 4 years ago
- scisorseqr is an R-package for processing of single-cell long read data and analyzing differential isoform expression across any two cond…☆43Updated 2 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58Updated 4 years ago
- A comprehensive toolkit for single-cell methylation sequencing data analysis☆28Updated 2 weeks ago
- Single-cell copy number calling and event history reconstruction.☆27Updated 11 months ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated last year
- SAMap: Mapping single-cell RNA sequencing datasets from evolutionarily distant organisms.☆85Updated last year
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆80Updated 9 months ago
- ☆34Updated 6 years ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆54Updated 4 years ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆26Updated last year
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆22Updated last year
- RNA editing tests☆17Updated 5 years ago
- ☆33Updated last year
- mgatk: mitochondrial genome analysis toolkit☆108Updated 11 months ago
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 6 years ago
- R implementation of MULTI-seq sample classification workflow☆64Updated 2 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆63Updated 2 years ago