kharchenkolab / scITDLinks
Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition
☆61Updated last year
Alternatives and similar repositories for scITD
Users that are interested in scITD are comparing it to the libraries listed below
Sorting:
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆56Updated 4 months ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆41Updated 3 weeks ago
- Aligning gene expression trajectories of single-cell reference and query systems☆73Updated last month
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated 9 months ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆32Updated last year
- R package for pathway analysis in scRNA-seq data☆75Updated last year
- ☆56Updated 2 weeks ago
- ☆58Updated 2 months ago
- ☆31Updated last month
- ☆45Updated last year
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆64Updated last week
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆37Updated 7 months ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆42Updated 2 years ago
- Unsupervised Inference of Developmental Directions for Single Cells☆22Updated last year
- ☆56Updated 11 months ago
- Analysis of cell-cell communication at single-cell resolution☆104Updated last year
- Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…☆61Updated 2 years ago
- ☆125Updated 3 years ago
- Multi-resolution Variational Inference☆22Updated 2 months ago
- R implementation of GeneTrajectory☆63Updated last year
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆78Updated 2 years ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆77Updated 4 months ago
- Functional Inference of Gene Regulation☆46Updated last year
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆79Updated 5 months ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆31Updated 8 months ago
- ☆31Updated 6 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆87Updated 3 months ago
- Python implementation of Milo for differential abundance testing on KNN graph☆74Updated 6 months ago
- Metacells - Single-cell RNA Sequencing Analysis☆111Updated 11 months ago