Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition
☆64Apr 14, 2024Updated 2 years ago
Alternatives and similar repositories for scITD
Users that are interested in scITD are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Single-cell Case Control Analysis☆57Feb 26, 2026Updated 2 months ago
- Code, data and analysis for moslin.☆15Oct 7, 2024Updated last year
- ☆16Sep 29, 2023Updated 2 years ago
- Code used for muti cellular factor analysis☆16Dec 13, 2023Updated 2 years ago
- scMalignantFinder is a Python package specially designed for analyzing cancer single-cell RNA-seq datasets to distinguish malignant cells…☆18Mar 27, 2026Updated last month
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Combined clonality and transcriptome scRNAseq clustering method☆11Dec 3, 2022Updated 3 years ago
- ☆33May 4, 2025Updated last year
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆195Jan 30, 2026Updated 3 months ago
- Core utilities for single-cell RNA-seq☆13Apr 6, 2026Updated last month
- Analysis of cell-cell communication at single-cell resolution☆107Sep 10, 2024Updated last year
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆125Mar 19, 2026Updated last month
- Conveniently process a dictionary of anndatas☆23Apr 17, 2026Updated 2 weeks ago
- R package for pathway analysis in scRNA-seq data☆79Aug 17, 2024Updated last year
- R package for semi-supervised single-cell data integration☆98Jan 27, 2026Updated 3 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆44Feb 19, 2026Updated 2 months ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆33Jan 30, 2026Updated 3 months ago
- ☆35Mar 16, 2026Updated last month
- A Bayesian model for compositional single-cell data analysis☆195Jan 13, 2026Updated 3 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆88Aug 10, 2025Updated 8 months ago
- a web-based interactive browser of a survey on ML4VIS studies☆12Aug 7, 2024Updated last year
- ☆11May 24, 2024Updated last year
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆430Apr 11, 2026Updated 3 weeks ago
- High dimensional weighted gene co-expression network analysis☆472Mar 13, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆187Mar 27, 2025Updated last year
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆36Jan 4, 2022Updated 4 years ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆225Apr 26, 2026Updated last week
- ☆61Feb 21, 2026Updated 2 months ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆31Aug 16, 2021Updated 4 years ago
- Assessing the purity of single cell population☆146Jun 3, 2022Updated 3 years ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Feb 22, 2025Updated last year
- Automated ingestion and conversion of various single-cell data formats, within and across species☆13Jan 26, 2026Updated 3 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆429Apr 27, 2026Updated last week
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Methods to discover gene programs on single-cell data☆182Apr 1, 2026Updated last month
- ☆20Apr 30, 2025Updated last year
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆122Jan 22, 2024Updated 2 years ago
- Cell type prioritization in single-cell data☆140Mar 26, 2026Updated last month
- Morphology-Enhanced Spatial Transcriptome Analysis Integrator☆27Mar 16, 2025Updated last year
- A package to help convert different single-cell data formats to each other☆465Feb 20, 2026Updated 2 months ago
- ☆65Sep 13, 2024Updated last year