AntonioDeFalco / SCEVANLinks
R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the malignant cells. It also infers the copy number profile of malignant cells, identifies subclonal structures and analyses the specific and shared alterations of each subpopulation.
☆120Updated last month
Alternatives and similar repositories for SCEVAN
Users that are interested in SCEVAN are comparing it to the libraries listed below
Sorting:
- ☆74Updated 2 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆114Updated 8 months ago
- ☆120Updated 4 months ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆135Updated 5 months ago
- The integration of single cell rank-based gene set enrichment analysis☆142Updated 6 months ago
- R package to visualize gene expression data based on weighted kernel density estimation☆109Updated last year
- Significance analysis for clustering single-cell RNA-sequencing data☆123Updated last year
- Publication Page for Satpathy*, Granja* et al 2019☆94Updated 5 years ago
- SCINA: A Semi-Supervised Subtyping Algorithm of Single Cells and Bulk Samples☆73Updated 4 years ago
- R package for Pathway RespOnsive GENe activity inference☆113Updated 2 years ago
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆74Updated 5 years ago
- Analysis of cell-cell communication at single-cell resolution☆106Updated last year
- Create stacked violin plot☆51Updated 3 years ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆113Updated 2 months ago
- Gene set scoring for single-cell data☆176Updated 2 months ago
- AUCell: score single cells with gene regulatory networks☆180Updated last year
- R package for semi-supervised single-cell data integration☆94Updated 3 weeks ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆98Updated 2 years ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆140Updated 4 years ago
- Single Cell Cluster Evaluation☆98Updated 4 years ago
- ☆65Updated 6 years ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆85Updated 2 years ago
- Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease☆96Updated 4 years ago
- scDIOR: Single cell data IO softwaRe☆152Updated 3 years ago
- R Package for Single-Cell Dataset Processing and Visualization☆65Updated 4 years ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated 2 years ago
- ☆114Updated last year
- Assessing the purity of single cell population☆140Updated 3 years ago
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆130Updated last year
- Single-cell multi-omics analysis reveals regulatory programs in clear cell renal cell carcinoma☆80Updated last year