AntonioDeFalco / SCEVAN
R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the malignant cells. It also infers the copy number profile of malignant cells, identifies subclonal structures and analyses the specific and shared alterations of each subpopulation.
☆95Updated 7 months ago
Alternatives and similar repositories for SCEVAN:
Users that are interested in SCEVAN are comparing it to the libraries listed below
- The integration of single cell rank-based gene set enrichment analysis☆116Updated 5 months ago
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆73Updated 4 years ago
- ☆98Updated last year
- Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease☆89Updated 3 years ago
- Publication Page for Satpathy*, Granja* et al 2019☆92Updated 4 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆92Updated last year
- R package to visualize gene expression data based on weighted kernel density estimation☆98Updated 10 months ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆100Updated 7 months ago
- ☆61Updated last year
- Methods to discover gene programs on single-cell data☆96Updated last month
- An open source and flexible pipeline to analysis high-throughput DNBelab C Series single-cell RNA datasets☆78Updated 3 months ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆72Updated 4 months ago
- R package for pathway analysis in scRNA-seq data☆66Updated 5 months ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆100Updated last year
- R package for semi-supervised single-cell data integration☆78Updated 11 months ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆93Updated last year
- Data and analysis scripts for our Embryo Timecourse paper.☆66Updated 5 years ago
- ☆59Updated 5 years ago
- ☆63Updated 2 years ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆89Updated last year
- ☆60Updated 4 years ago
- Significance analysis for clustering single-cell RNA-sequencing data☆108Updated 4 months ago
- R Package for Single-Cell Dataset Processing and Visualization☆61Updated 3 years ago
- ☆76Updated last year
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆68Updated 4 months ago
- Analysis of cell-cell communication at single-cell resolution☆100Updated 4 months ago
- Assessing the purity of single cell population☆117Updated 2 years ago
- A tool for removing doublets from single-cell RNA-seq data☆70Updated 4 years ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆77Updated last year
- Mollecular Functional Portraits☆36Updated 9 months ago