Alternatives and similar repositories for SCEVAN

Users that are interested in SCEVAN are comparing it to the libraries listed below

• Japrin / STARTRAC
  STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)
  ☆110Updated 7 months ago
• rpolicastro / scProportionTest
  ☆74Updated 2 years ago
• immunogenomics / symphony
  Efficient and precise single-cell reference atlas mapping with Symphony
  ☆112Updated last month
• powellgenomicslab / Nebulosa
  R package to visualize gene expression data based on weighted kernel density estimation
  ☆109Updated last year
• GreenleafLab / 10x-scATAC-2019
  Publication Page for Satpathy*, Granja* et al 2019
  ☆95Updated 5 years ago
• carmonalab / scGate
  marker-based purification of cell types from single-cell RNA-seq datasets
  ☆131Updated 4 months ago
• chuiqin / irGSEA
  The integration of single cell rank-based gene set enrichment analysis
  ☆140Updated 5 months ago
• LocasaleLab / Single-Cell-Metabolic-Landscape
  Pipeline for exploring metebolic heterogeneity at single-cell resolution
  ☆74Updated 5 years ago
• TheHumphreysLab / plot1cell
  ☆116Updated 3 months ago
• carmonalab / STACAS
  R package for semi-supervised single-cell data integration
  ☆90Updated 3 months ago
• swaruplab / Single-nuclei-epigenomic-and-transcriptomic-landscape-in-Alzheimer-disease
  Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease
  ☆97Updated 4 years ago
• Coolgenome / iTALK
  ☆63Updated 6 years ago
• BlishLab / scriabin
  Analysis of cell-cell communication at single-cell resolution
  ☆105Updated last year
• saezlab / progeny
  R package for Pathway RespOnsive GENe activity inference
  ☆111Updated 2 years ago
• igrabski / sc-SHC
  Significance analysis for clustering single-cell RNA-sequencing data
  ☆119Updated last year
• RausellLab / CelliD
  Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.
  ☆95Updated 2 years ago
• ShellyCoder / cellcall
  inferring cell-cell communication from scRNA-seq of ligand-receptor
  ☆84Updated 2 years ago
• ycl6 / StackedVlnPlot
  Create stacked violin plot
  ☆51Updated 3 years ago
• jackbibby1 / SCPA
  R package for pathway analysis in scRNA-seq data
  ☆76Updated last year
• aertslab / AUCell
  AUCell: score single cells with gene regulatory networks
  ☆174Updated last year
• quadbio / scMultiome_analysis_vignette
  Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis
  ☆68Updated last year
• YutingPKU / SingleCell-Multiomics
  ☆71Updated 3 years ago
• tiroshlab / 3ca
  Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".
  ☆129Updated last year
• BaderLab / CellAnnotationTutorial
  Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods
  ☆97Updated 2 years ago
• carmonalab / UCell
  Gene set scoring for single-cell data
  ☆171Updated last month
• basilkhuder / Seurat-to-RNA-Velocity
  A guide to using a Seurat object in conjunction with RNA Velocity
  ☆139Updated 3 years ago
• xmc811 / Scillus
  R Package for Single-Cell Dataset Processing and Visualization
  ☆65Updated 4 years ago
• Dragonlongzhilin / RenalTumor
  Single-cell multi-omics analysis reveals regulatory programs in clear cell renal cell carcinoma
  ☆80Updated last year
• jcao89757 / SCINA
  SCINA: A Semi-Supervised Subtyping Algorithm of Single Cells and Bulk Samples
  ☆71Updated 3 years ago
• crazyhottommy / scclusteval
  Single Cell Cluster Evaluation
  ☆98Updated 4 years ago