colomemaria / epiAneufinder
R package to detect breakpoints and assign somies to scATAC-seq data
☆33Updated this week
Alternatives and similar repositories for epiAneufinder:
Users that are interested in epiAneufinder are comparing it to the libraries listed below
- An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)☆35Updated 6 months ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆50Updated last year
- ☆54Updated last year
- Functional Inference of Gene Regulation☆40Updated 7 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆26Updated 3 months ago
- scWGCNA☆57Updated 2 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆71Updated 10 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆59Updated 4 months ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆36Updated 4 months ago
- Pan-Cancer Single Cell Classifier☆64Updated 9 months ago
- Inferring CNV data from single cell ATAC seq☆23Updated last year
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆29Updated 6 months ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆25Updated 4 months ago
- R package for analysing single cell data☆52Updated 2 years ago
- A tool for removing doublets from single-cell RNA-seq data☆72Updated 4 years ago
- ☆30Updated last month
- Functions for single cell data analysis☆30Updated 3 years ago
- ☆26Updated 7 months ago
- R package for pathway analysis in scRNA-seq data☆69Updated 6 months ago
- Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…☆24Updated 7 months ago
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆20Updated 2 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆72Updated 6 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆28Updated 8 months ago
- ☆27Updated 4 months ago
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- ☆32Updated 10 months ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆30Updated last year
- ☆45Updated 7 months ago
- Create cisTarget databases☆45Updated 3 weeks ago
- R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem☆19Updated 2 years ago