R package to detect breakpoints and assign somies to scATAC-seq data
☆42Dec 1, 2025Updated 3 months ago
Alternatives and similar repositories for epiAneufinder
Users that are interested in epiAneufinder are comparing it to the libraries listed below
Sorting:
- Camiel's scATAC-seq analysis pipeline☆13Apr 15, 2024Updated last year
- Inferring CNV data from single cell ATAC seq☆25Jun 24, 2025Updated 8 months ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆32Mar 10, 2023Updated 2 years ago
- Parse ArchR arrow files to anndata h5ad☆16Dec 14, 2023Updated 2 years ago
- Functional Inference of Gene Regulation☆51Jul 5, 2024Updated last year
- ☆17Sep 28, 2022Updated 3 years ago
- ☆12Apr 16, 2021Updated 4 years ago
- Single-cell Hi-C data analysis toolbox☆27Aug 13, 2021Updated 4 years ago
- ☆33Oct 4, 2024Updated last year
- ☆19Mar 8, 2023Updated 3 years ago
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆35Jan 4, 2022Updated 4 years ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆33Jan 30, 2026Updated last month
- ☆19Dec 15, 2023Updated 2 years ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆20Sep 12, 2023Updated 2 years ago
- Some tools for plotting single-cell data☆178May 17, 2025Updated 9 months ago
- A tool for detecting somatic variants in single cell data☆217Sep 15, 2024Updated last year
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆58Jan 29, 2026Updated last month
- Analysis of cell-cell communication at single-cell resolution☆106Sep 10, 2024Updated last year
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆246Jan 16, 2026Updated last month
- ☆115Apr 24, 2024Updated last year
- Multi-omic velocity inference☆116Oct 23, 2024Updated last year
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆80Jan 6, 2026Updated 2 months ago
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆20Jul 2, 2024Updated last year
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11May 25, 2023Updated 2 years ago
- Combined clonality and transcriptome scRNAseq clustering method☆11Dec 3, 2022Updated 3 years ago
- Multigrate: multiomic data integration for single-cell genomics☆31Mar 2, 2026Updated last week
- BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses☆22Jul 11, 2021Updated 4 years ago
- Publication Page for Satpathy*, Granja* et al 2019☆95Apr 29, 2020Updated 5 years ago
- COMUNET: a tool to explore and visualize intercellular communication☆12Apr 15, 2020Updated 5 years ago
- Single-cell Case Control Analysis☆53Feb 26, 2026Updated last week
- Patho-DBiT is a platform to spatially decode RNA Biology in archival FFPE tissues.☆13Aug 15, 2024Updated last year
- ☆10Sep 27, 2022Updated 3 years ago
- Publication Page for the Noack et al. 2021 Nature Neuroscience paper☆10Feb 7, 2022Updated 4 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Aug 8, 2022Updated 3 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Oct 17, 2024Updated last year
- ☆47Apr 18, 2020Updated 5 years ago
- Single-cell epigenomics analysis tools☆310Updated this week
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆144Apr 5, 2024Updated last year
- ☆11Jan 12, 2024Updated 2 years ago