Alternatives and similar repositories for Spotiphy

Users that are interested in Spotiphy are comparing it to the libraries listed below

• Yelab2020 / Cottrazm
  Construct Tumor Transition Zone Microenvironment
  ☆48Updated 2 months ago
• STOmics / StereoSiTE
  Spatial transcriptome analysis in python
  ☆23Updated 6 months ago
• Chuxj / CRC-atlas
  ☆31Updated last year
• christophhmayr / 2023_Mayr
  Code for the spatial transcriptomic paper on IPF lungs
  ☆19Updated last year
• Xinyiw28 / CrossChat
  Detect hierarchical structures in cell-cell communications
  ☆13Updated 6 months ago
• lfranzen / spatial-lung-fibrosis
  Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…
  ☆28Updated last year
• Teichlab / HCA_Heart_ver2
  ☆37Updated 2 years ago
• liziyie / Onco-fetal-CAF-in-HCC
  ☆20Updated last year
• yanailab / PanCancer
  Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…
  ☆31Updated 3 years ago
• aliceygao / pan-Fibroblast
  ☆47Updated last year
• bio-Pixel / panVC
  ☆51Updated last year
• Banovich-Lab / Spatial_PF
  ☆29Updated last month
• bioinfo-biols / SEVtras
  sEV-containing droplet identification in scRNA-seq data (SEVtras)
  ☆26Updated 6 months ago
• kaifuchenlab / MEBOCOST
  ☆27Updated last week
• tiroshlab / Spatial_Glioma
  Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper
  ☆50Updated 7 months ago
• SunXQlab / scMLnet
  Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks
  ☆27Updated 4 years ago
• YingMa0107 / IRIS
  Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics
  ☆37Updated 6 months ago
• Lan-lab / sc-GC
  ☆31Updated 3 years ago
• yqq-chen / CRC_ICB
  ☆32Updated last year
• lifei176 / Single-cell-atlas-of-sex-differences-and-androgen-effects
  ☆17Updated last year
• xiaoyeye / TFvelo
  ☆45Updated last year
• data2intelligence / SpaCET
  Spatial Cellular Estimator for Tumors
  ☆57Updated last week
• jlaffy / scalop
  Single Cell Analysis Operations
  ☆13Updated 5 months ago
• ChanLab-UTSW / BreastCancer_Integrated
  ☆30Updated 5 months ago
• Teichlab / PanGIAtlas
  Integration of gut cell atlases
  ☆27Updated 6 months ago
• youqiongye / CRC_scRNAseq
  ☆47Updated 3 years ago
• aerickso / SpatialInferCNV
  Clone Calling from Visium Spatial Transcriptomics of Cancer samples
  ☆76Updated 2 years ago
• ccruizm / GBmap
  Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…
  ☆60Updated 2 years ago
• KramannLab / visium_heart
  Spatial transcriptomics of heart tissue
  ☆22Updated 3 years ago
• meta-cancer / scPLC
  Codes for the scPLC project
  ☆68Updated 2 years ago