Alternatives and similar repositories for Spotiphy:

Users that are interested in Spotiphy are comparing it to the libraries listed below

• KramannLab / visium_heart
  Spatial transcriptomics of heart tissue
  ☆20Updated 2 years ago
• Chuxj / CRC-atlas
  ☆25Updated 10 months ago
• christophhmayr / 2023_Mayr
  Code for the spatial transcriptomic paper on IPF lungs
  ☆16Updated 9 months ago
• Banovich-Lab / Spatial_PF
  ☆24Updated 2 months ago
• Teichlab / HCA_Heart_ver2
  ☆32Updated last year
• bioinfo-biols / SEVtras
  sEV-containing droplet identification in scRNA-seq data (SEVtras)
  ☆25Updated 2 months ago
• BKI-immuno-KNS / MANAscore
  A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types
  ☆11Updated last month
• lifei176 / Single-cell-atlas-of-sex-differences-and-androgen-effects
  ☆17Updated last year
• jlaffy / scalop
  Single Cell Analysis Operations
  ☆13Updated last month
• yanailab / PanCancer
  Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…
  ☆30Updated 2 years ago
• Yelab2020 / Cottrazm
  Construct Tumor Transition Zone Microenvironment
  ☆42Updated 5 months ago
• LungCellAtlas / scRNAseq_pipelines
  Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas
  ☆36Updated 4 years ago
• compbioNJU / scPDAC
  R code used to analyze single cell PDAC data
  ☆34Updated 9 months ago
• liziyie / Onco-fetal-CAF-in-HCC
  ☆20Updated last year
• Teichlab / SKM_ageing_atlas
  ☆12Updated last year
• ma-jq / B
  ☆23Updated 11 months ago
• wu-yc / neutrophil
  ☆15Updated 2 years ago
• kaifuchenlab / MEBOCOST
  ☆16Updated 10 months ago
• shyhihihi / MERCI
  MERCI for tracing of mitochondrion transfer between single cancer and T cells
  ☆21Updated 11 months ago
• pritykinlab / ulipstic-analysis
  ☆9Updated 9 months ago
• marcalva / hcc_sc_2022
  HCC single cell analysis for Alvarez, Benhammou et al.
  ☆16Updated 2 years ago
• SaskiaFreytag / spatial_brain_cancer
  ☆13Updated last year
• ChanLab-UTSW / BreastCancer_Integrated
  ☆28Updated 2 months ago
• jumphone / Vector
  Unsupervised Inference of Developmental Directions for Single Cells
  ☆21Updated last year
• welch-lab / cytosignal
  ☆17Updated last week
• strangephone / EENT-ONB
  scRNA-seq analysis of EENT-ONB
  ☆20Updated last year
• SunXQlab / scMLnet
  Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks
  ☆26Updated 3 years ago
• lfranzen / spatial-lung-fibrosis
  Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…
  ☆26Updated 9 months ago
• BernsteinLab / Myeloid-Glioma
  Scripts used to perform the analyses to study the Biology of Myeloid Cells in Glioma Microenvironments
  ☆16Updated 3 weeks ago
• LiHongCSBLab / SOAPy
  ☆27Updated 2 months ago