jyyulab / SpotiphyLinks
Spot pseudo-Imager on top of histology
☆44Updated last month
Alternatives and similar repositories for Spotiphy
Users that are interested in Spotiphy are comparing it to the libraries listed below
Sorting:
- ☆34Updated 2 months ago
- Construct Tumor Transition Zone Microenvironment☆49Updated 6 months ago
- Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…☆30Updated last year
- Code for the spatial transcriptomic paper on IPF lungs☆19Updated last year
- ☆33Updated last year
- ☆32Updated 3 years ago
- ☆54Updated 5 months ago
- ☆17Updated last year
- Single Cell Analysis Operations☆13Updated last month
- Spatial Cellular Estimator for Tumors☆60Updated 2 weeks ago
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆53Updated last year
- SenePy is a set of tools to score single-cells based on their expression of cell-specific senescence markers. Please see the following pu…☆47Updated 11 months ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Updated 10 months ago
- scRNA-seq analysis of EENT-ONB☆22Updated 2 years ago
- ☆55Updated last year
- Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…☆109Updated 7 months ago
- Detect hierarchical structures in cell-cell communications☆16Updated 11 months ago
- Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…☆65Updated 3 years ago
- ☆40Updated 2 years ago
- ☆33Updated last year
- ☆16Updated 2 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆80Updated 5 months ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆41Updated 11 months ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆29Updated 4 years ago
- Repository for ENACT pipeline for end-to-end analysis of Visium HD data☆71Updated 7 months ago
- ☆56Updated last year
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆31Updated 3 years ago
- ☆48Updated 3 years ago
- This repository includes codes and data example used in the "Integrative Spatial Analysis Reveals Tumor Heterogeneity and Immune Colon…☆15Updated 7 months ago
- Spatial transcriptomics of heart tissue☆28Updated 3 years ago