Alternatives and similar repositories for generecovery

Users that are interested in generecovery are comparing it to the libraries listed below

• wmacnair / psupertime
  psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels
  ☆44Updated 3 years ago
• shenorrLabTRDF / cellAlign
  ☆43Updated 5 years ago
• powellgenomicslab / DropletQC
  Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data
  ☆40Updated 4 years ago
• UPSUTER / GEMLI
  ☆33Updated 11 months ago
• niaid / dsb
  Normalize CITEseq Data
  ☆66Updated 2 months ago
• ZJUFanLab / CellTalkDB
  A manually curated database of literature-supported ligand-receptor interactions in human and mouse
  ☆32Updated last year
• kharchenkolab / cacoa
  Single-cell Case Control Analysis
  ☆52Updated 3 weeks ago
• JinmiaoChenLab / FastIntegration
  FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis
  ☆23Updated last year
• davemcg / scEiaD
  Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas
  ☆26Updated 2 years ago
• atakanekiz / CIPR-Package
  Cluster Identity Predictor (R package implementation)
  ☆21Updated 3 years ago
• NBISweden / single-cell_sib_scilifelab
  SIB/Scilifelab autumn school in single cell omics 2019.
  ☆22Updated 6 years ago
• FelixTheStudent / cellpypes
  Cell type pipes for R
  ☆52Updated last year
• single-cell-genetics / cardelino
  Clone identification from single-cell data
  ☆61Updated 3 years ago
• single-cell-genetics / XClone
  Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.
  ☆38Updated 2 months ago
• BimberLab / cellhashR
  An R package designed to demultiplex cell hashing data
  ☆31Updated this week
• elimereu / matchSCore2
  ☆56Updated 5 years ago
• BradBalderson / Cytocipher
  Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…
  ☆38Updated 2 years ago
• phipsonlab / speckle
  R package for analysing single cell data
  ☆59Updated 3 years ago
• satijalab / azimuth-references
  ☆26Updated 8 months ago
• cellatlas / cellatlas
  ☆17Updated last year
• JEFworks-Lab / veloviz
  RNA-velocity informed embeddings for visualizing cellular trajectories
  ☆44Updated 3 years ago
• wmacnair / SampleQC
  Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data
  ☆39Updated 3 years ago
• saezlab / CollecTRI
  Gene regulatory network containing signed transcription factor-target gene interactions
  ☆94Updated 7 months ago
• amcdavid / CellaRepertorium
  Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)
  ☆15Updated 6 months ago
• alexisvdb / singleCellHaystack
  Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).
  ☆86Updated last month
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆44Updated 4 months ago
• scCOVID-19 / COVIDPBMC
  Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection
  ☆41Updated 4 years ago
• CFeregrino / scWGCNA
  scWGCNA
  ☆61Updated 3 years ago
• theislab / hadge
  Comprehensive pipeline for donor demultiplexing in single cell
  ☆24Updated this week
• cbib / Seurat-Integrate
  R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…
  ☆31Updated 4 months ago