Alternatives and similar repositories for generecovery

Users that are interested in generecovery are comparing it to the libraries listed below

• wmacnair / psupertime
  psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels
  ☆42Updated 3 years ago
• niaid / dsb
  Normalize CITEseq Data
  ☆66Updated 5 months ago
• UPSUTER / GEMLI
  ☆32Updated 7 months ago
• JinmiaoChenLab / FastIntegration
  FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis
  ☆23Updated 10 months ago
• powellgenomicslab / DropletQC
  Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data
  ☆40Updated 3 years ago
• shenorrLabTRDF / cellAlign
  ☆42Updated 4 years ago
• BimberLab / cellhashR
  An R package designed to demultiplex cell hashing data
  ☆31Updated last week
• saezlab / CollecTRI
  Gene regulatory network containing signed transcription factor-target gene interactions
  ☆87Updated 3 months ago
• cellatlas / cellatlas
  ☆17Updated last year
• davemcg / scEiaD
  Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas
  ☆26Updated last year
• satijalab / azimuth-references
  ☆24Updated 4 months ago
• kharchenkolab / cacoa
  Single-cell Case Control Analysis
  ☆52Updated 2 weeks ago
• CFeregrino / scWGCNA
  scWGCNA
  ☆61Updated 2 years ago
• single-cell-genetics / cardelino
  Clone identification from single-cell data
  ☆61Updated 2 years ago
• alexisvdb / singleCellHaystack
  Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).
  ☆85Updated last year
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆43Updated last week
• Oshlack / speckle
  R package for specialised analysis of single cell data
  ☆39Updated 2 years ago
• bioinfoDZ / RISC
  A R package for integrated scRNA-seq data analysis using the RPCI algorithm
  ☆44Updated last year
• atakanekiz / CIPR-Package
  Cluster Identity Predictor (R package implementation)
  ☆20Updated 3 years ago
• GfellerLab / SuperCell
  Coarse-graining of large single-cell RNA-seq data into metacells
  ☆88Updated 2 months ago
• lhe17 / nebula
  ☆42Updated 3 months ago
• neurorestore / DE-analysis
  ☆39Updated 4 years ago
• tk382 / HIPPO
  Heterogeneity Induced Pre-Processing tOol
  ☆18Updated 4 years ago
• MSingerLab / COMETSC
  COMET Single-Cell Marker Detection tool
  ☆31Updated 3 years ago
• NBISweden / single-cell_sib_scilifelab
  SIB/Scilifelab autumn school in single cell omics 2019.
  ☆22Updated 5 years ago
• jyyulab / scMINER
  Single-cell Mutual Information-based Network Engineering Ranger
  ☆20Updated 2 weeks ago
• elimereu / matchSCore2
  ☆55Updated 4 years ago
• ZJUFanLab / CellTalkDB
  A manually curated database of literature-supported ligand-receptor interactions in human and mouse
  ☆31Updated last year
• FelixTheStudent / cellpypes
  Cell type pipes for R
  ☆52Updated last year
• prabhakarlab / RCAv2
  R package for robust clustering of single cell RNA sequencing data
  ☆35Updated last year