SNV calling from single cell sequencing
☆118Nov 11, 2024Updated last year
Alternatives and similar repositories for Monopogen
Users that are interested in Monopogen are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A tool for detecting somatic variants in single cell data☆217Sep 15, 2024Updated last year
- Efficient genotyping bi-allelic SNPs on single cells☆158Oct 30, 2025Updated 5 months ago
- scSNV Mapping tool for 10X Single Cell Data☆26Dec 19, 2025Updated 3 months ago
- Single-Cell Genotyping Tool☆217Oct 2, 2023Updated 2 years ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆33Jan 30, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆133Sep 6, 2024Updated last year
- Tool for modelling of mitochondrial heteroplasmy☆21Jul 16, 2024Updated last year
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆83Jun 9, 2022Updated 3 years ago
- ☆34Jun 7, 2019Updated 6 years ago
- scMalignantFinder is a Python package specially designed for analyzing cancer single-cell RNA-seq datasets to distinguish malignant cells…☆17Mar 27, 2026Updated 2 weeks ago
- R package for generalized binary covariance decomposition.☆16Jul 13, 2025Updated 9 months ago
- R package for ReDeeM: single-cell Regulatory multi-omics with Deep Mitochondrial mutation profiling.☆19Oct 3, 2025Updated 6 months ago
- A computational tool for identification of 3D multi-modal spatial neighborhoods☆15Aug 1, 2025Updated 8 months ago
- ☆40Aug 29, 2025Updated 7 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆277Oct 13, 2025Updated 6 months ago
- LongSom tool for long-reads☆11May 20, 2025Updated 10 months ago
- Interactive multiscale visualization for structural variation in human genomes☆72Apr 3, 2026Updated last week
- R package implementation of Milo for testing for differential abundance in KNN graphs☆425Updated this week
- R package to infer biological activities from omics data using a collection of methods.☆289Dec 16, 2025Updated 3 months ago
- ☆78Jul 12, 2023Updated 2 years ago
- ☆62Dec 8, 2025Updated 4 months ago
- DeepMosaic is a deep-learning-based mosaic single nucleotide classification tool without the need of matched control information.☆52Dec 6, 2025Updated 4 months ago
- An R library for conducting analyses on COMPASS data.☆16Jun 10, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…☆14Jan 15, 2017Updated 9 years ago
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆17Sep 26, 2021Updated 4 years ago
- Single-cell disease relevance score (scDRS)☆179Sep 2, 2025Updated 7 months ago
- single-cell Contamination Detection and Correction☆18Jan 15, 2025Updated last year
- Unsupervised Inference of Developmental Directions for Single Cells☆23Jan 12, 2024Updated 2 years ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆388Jul 30, 2025Updated 8 months ago
- ☆55Aug 1, 2024Updated last year
- A tool for semi-automatic cell type classification☆466Mar 21, 2026Updated 3 weeks ago
- Python library for plotting Cellphonedb results. Ported from ktplots R package.☆57Mar 16, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ABSOLUTE source code that works with allelic copy ratio on both hg19 and hg38☆13Nov 5, 2025Updated 5 months ago
- Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.☆185Apr 6, 2026Updated last week
- ☆15Apr 2, 2023Updated 3 years ago
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆124Mar 19, 2026Updated 3 weeks ago
- ☆147Mar 20, 2026Updated 3 weeks ago
- Morphology-Enhanced Spatial Transcriptome Analysis Integrator☆27Mar 16, 2025Updated last year
- ☆210Mar 26, 2026Updated 2 weeks ago