SNV calling from single cell sequencing
☆119Nov 11, 2024Updated last year
Alternatives and similar repositories for Monopogen
Users that are interested in Monopogen are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- mapping somatic variants to cell barcodes in scRNA-Seq data☆11Sep 21, 2026Updated last month
- A tool for detecting somatic variants in single cell data☆229Sep 15, 2024Updated 2 years ago
- Efficient genotyping bi-allelic SNPs on single cells☆172Sep 29, 2026Updated last month
- single cell recurrence based variant analysis☆12Dec 13, 2022Updated 3 years ago
- scSNV Mapping tool for 10X Single Cell Data☆26Dec 19, 2025Updated 10 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- LongSom tool for long-reads☆13May 20, 2025Updated last year
- ☆35Jun 7, 2019Updated 7 years ago
- Single-Cell Genotyping Tool☆218Oct 26, 2026Updated last week
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆33Jan 30, 2026Updated 9 months ago
- Tool for modelling of mitochondrial heteroplasmy☆21Jul 16, 2024Updated 2 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆84Jun 9, 2022Updated 4 years ago
- Single nucleotide variant (SNV) detection and genotyping algorithm for single-cell DNA sequencing data☆15May 8, 2020Updated 6 years ago
- ☆43Aug 29, 2025Updated last year
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆427Sep 12, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆314Jun 16, 2026Updated 4 months ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆38Sep 25, 2026Updated last month
- R package implementation of Milo for testing for differential abundance in KNN graphs☆450Aug 25, 2026Updated 2 months ago
- ☆81Jul 12, 2023Updated 3 years ago
- An R library for conducting analyses on COMPASS data.☆20Jun 10, 2021Updated 5 years ago
- CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links☆44Nov 13, 2024Updated last year
- R package for generalized binary covariance decomposition.☆16Jul 13, 2025Updated last year
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆141Sep 6, 2024Updated 2 years ago
- ☆17Apr 2, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- R package to infer biological activities from omics data using a collection of methods.☆313Oct 26, 2026Updated last week
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆24Jan 16, 2024Updated 2 years ago
- Single-cell disease relevance score (scDRS)☆201Aug 27, 2026Updated 2 months ago
- CellRank: dynamics from multi-view single-cell data☆460Oct 14, 2026Updated 2 weeks ago
- ☆18Jun 13, 2024Updated 2 years ago
- Building a Singularity image of Polysolver☆10Dec 13, 2019Updated 6 years ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆18Feb 19, 2020Updated 6 years ago
- DeepMosaic is a deep-learning-based mosaic single nucleotide classification tool without the need of matched control information.☆58May 21, 2026Updated 5 months ago
- A tool for semi-automatic cell type classification☆517May 22, 2026Updated 5 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- R package for ReDeeM: single-cell Regulatory multi-omics with Deep Mitochondrial mutation profiling.☆21Jul 8, 2026Updated 3 months ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆21Jan 17, 2020Updated 6 years ago
- Scripts to reproduce the analysis of the MAESTER paper (https://www.nature.com/articles/s41587-022-01210-8).☆14May 18, 2024Updated 2 years ago
- Analysis scripts and notebooks for Numbat paper☆10Aug 12, 2022Updated 4 years ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆135Aug 3, 2026Updated 2 months ago
- ☆92Apr 5, 2021Updated 5 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆94Oct 11, 2026Updated 3 weeks ago