KChen-lab / MonopogenLinks
SNV calling from single cell sequencing
☆100Updated 6 months ago
Alternatives and similar repositories for Monopogen
Users that are interested in Monopogen are comparing it to the libraries listed below
Sorting:
- Tools for single-cell data processing☆124Updated last year
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆59Updated last year
- Analysis pipeline for ATAC-seq data☆60Updated last year
- mgatk: mitochondrial genome analysis toolkit☆108Updated 4 months ago
- Analysis pipeline for ATAC-seq Data☆61Updated 3 years ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆52Updated 3 years ago
- ☆107Updated last year
- Basic workflow for ATAC-seq analysis☆78Updated last year
- ☆67Updated last year
- ☆91Updated 2 weeks ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆77Updated 2 years ago
- ☆108Updated 2 months ago
- Publication Page for Satpathy*, Granja* et al 2019☆94Updated 5 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 4 years ago
- An open source and flexible pipeline to analysis high-throughput DNBelab C Series single-cell RNA datasets☆94Updated last month
- wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq☆57Updated 2 months ago
- Links to ATAC-seq analysis tools☆66Updated 3 years ago
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆66Updated 3 weeks ago
- Tutorial Website☆59Updated 4 years ago
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆106Updated 2 months ago
- Analysis of Paired-Tag datasets☆42Updated last year
- R implementation of MULTI-seq sample classification workflow☆62Updated last year
- A toolkit for QC and visualization of ATAC-seq results.☆70Updated 4 months ago
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆74Updated last month
- ☆80Updated last year
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated last year
- Repository for Cibersortx☆59Updated 4 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 5 years ago
- ☆85Updated 4 years ago
- Efficient genotyping bi-allelic SNPs on single cells☆143Updated 11 months ago