ShouWenWang-Lab / MethylTreeLinks
☆18Updated 2 months ago
Alternatives and similar repositories for MethylTree
Users that are interested in MethylTree are comparing it to the libraries listed below
Sorting:
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆61Updated last year
- inferring regulatory cellular dynamics☆50Updated last week
- Aligning gene expression trajectories of single-cell reference and query systems☆73Updated 2 weeks ago
- Functional Inference of Gene Regulation☆46Updated last year
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆32Updated last year
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆41Updated this week
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- ☆56Updated 2 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated 8 months ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 10 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 7 months ago
- Multi-resolution Variational Inference☆23Updated 2 months ago
- ☆35Updated 11 months ago
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆27Updated last year
- ☆37Updated 2 months ago
- ☆29Updated 5 months ago
- Analysis of cell-cell communication at single-cell resolution☆104Updated 11 months ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆73Updated 3 weeks ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated 11 months ago
- ☆29Updated 3 months ago
- ☆37Updated last year
- Data analysis for the moscot-framework project☆14Updated 8 months ago
- ☆56Updated last year
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆79Updated 5 months ago
- R implementation of GeneTrajectory☆63Updated last year
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆27Updated 4 years ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆44Updated 2 years ago
- cell type specific, trait-associated gene regulation☆27Updated 4 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆86Updated 2 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆63Updated 3 weeks ago