spcdot / CopyscATLinks
Inferring CNV data from single cell ATAC seq
☆24Updated 2 months ago
Alternatives and similar repositories for CopyscAT
Users that are interested in CopyscAT are comparing it to the libraries listed below
Sorting:
- Single cell RNA-seq analysis bundle☆35Updated 5 years ago
- R package to detect breakpoints and assign somies to scATAC-seq data☆40Updated 3 weeks ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 10 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆73Updated 2 weeks ago
- ☆50Updated 5 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆42Updated last year
- MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via…☆23Updated 2 years ago
- A pipeline for scRNA-seq data analysis☆15Updated 4 months ago
- Functional Inference of Gene Regulation☆46Updated last year
- A tool for removing doublets from single-cell RNA-seq data☆74Updated 4 years ago
- scWGCNA☆61Updated 2 years ago
- Draw phylogenetic trees of tumor evolution☆81Updated 2 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated 4 months ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆87Updated last month
- All software used for “Decoding human fetal liver haematopoiesis” (Popescu, Botting, Stephenson et al., 2019).☆39Updated 5 years ago
- A robust and accurate cell type classifier for single cell RNA-seq data☆16Updated 2 years ago
- Reusable scripts and functions archive for the paper "Organoid single-cell genomic atlas uncovers human-specific features of brain develo…☆36Updated 4 years ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆31Updated 7 months ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆22Updated last year
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- Functions for single cell data analysis☆32Updated 4 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated 8 months ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆38Updated 4 years ago
- ☆13Updated last year
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated last year
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- ☆37Updated last year
- ☆32Updated 7 months ago
- Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…☆60Updated 2 years ago
- Code repository for single cell RNA-seq☆36Updated 4 years ago