spcdot / CopyscATLinks
Inferring CNV data from single cell ATAC seq
☆24Updated 2 months ago
Alternatives and similar repositories for CopyscAT
Users that are interested in CopyscAT are comparing it to the libraries listed below
Sorting:
- Single cell RNA-seq analysis bundle☆36Updated 6 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 10 months ago
- R package to detect breakpoints and assign somies to scATAC-seq data☆40Updated 3 weeks ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆42Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆73Updated last month
- Functions for single cell data analysis☆32Updated 4 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated 4 months ago
- ☆50Updated 5 years ago
- Functional Inference of Gene Regulation☆46Updated last year
- Draw phylogenetic trees of tumor evolution☆86Updated 2 years ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated last year
- A tool for removing doublets from single-cell RNA-seq data☆74Updated 4 years ago
- scWGCNA☆61Updated 2 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- All software used for “Decoding human fetal liver haematopoiesis” (Popescu, Botting, Stephenson et al., 2019).☆39Updated 5 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆109Updated 4 months ago
- ☆63Updated 4 years ago
- simpler single cell RNAseq data clustering☆40Updated 6 months ago
- Reusable scripts and functions archive for the paper "Organoid single-cell genomic atlas uncovers human-specific features of brain develo…☆36Updated 4 years ago
- Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…☆61Updated 2 years ago
- ☆62Updated 6 years ago
- ☆33Updated 6 years ago
- A R package for advanced single cell data viz☆68Updated 2 weeks ago
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 5 years ago
- Feature Ranking in (possibly large) Clustered Single Cell Data☆40Updated 4 years ago
- ☆31Updated 2 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆88Updated 2 months ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆42Updated 4 years ago
- ☆41Updated 4 years ago
- R package for robust clustering of single cell RNA sequencing data☆35Updated last year