☆41Aug 29, 2025Updated 11 months ago
Alternatives and similar repositories for scAllele
Users that are interested in scAllele are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Combined clonality and transcriptome scRNAseq clustering method☆11Dec 3, 2022Updated 3 years ago
- scSNV Mapping tool for 10X Single Cell Data☆26Dec 19, 2025Updated 7 months ago
- a bioinformatics tool for simulating single-cell genome sequencing data☆10Dec 19, 2019Updated 6 years ago
- A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.☆23Apr 16, 2019Updated 7 years ago
- ☆14Apr 4, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening …☆25Oct 3, 2023Updated 2 years ago
- A collection of bioinformatics data analysis notebooks focused on providing examples of current best practices in sequencing data analysi…☆18Updated this week
- ☆32Jul 7, 2026Updated last month
- SClineager: a Bayesian hierarchical model that performs lineage tracing of single cells based on genetic markers☆11Apr 30, 2024Updated 2 years ago
- ☆18Nov 24, 2024Updated last year
- cell type specific, trait-associated gene regulation☆30Updated this week
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆60Jan 29, 2026Updated 6 months ago
- Somatic indel discovery tool for tumor RNA-Seq data.☆24Nov 21, 2025Updated 8 months ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆33Jan 30, 2026Updated 6 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Integrating temporal gene expression modalities for trajectory inference and disease prediction☆11Sep 20, 2022Updated 3 years ago
- SNV calling from single cell sequencing☆120Nov 11, 2024Updated last year
- Pseudotime Analysis for Bulk Data☆19Aug 2, 2024Updated 2 years ago
- The analysis pipeline for FLEP-seq☆17Aug 18, 2023Updated 2 years ago
- Draw phylogenetic trees of tumor evolution☆86Jul 21, 2023Updated 3 years ago
- CWL+Singularity implementation of an RNA editing workflow☆40Dec 18, 2020Updated 5 years ago
- ☆39Apr 21, 2026Updated 3 months ago
- ☆19Mar 8, 2023Updated 3 years ago
- Codes for the Iso-Seq variant-calling paper☆11Apr 28, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Workflow for Sequenza, cellularity and ploidy☆28Jun 11, 2026Updated last month
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆36Jan 4, 2022Updated 4 years ago
- ☆11Jul 8, 2024Updated 2 years ago
- In this study, we perform systematic comparative analysis of seven widely-used SNV-calling methods, including SAMtools, the GATK Best Pra…☆16Oct 16, 2019Updated 6 years ago
- cEll tyPe enrIChment☆17Dec 11, 2022Updated 3 years ago
- Next-Gen Sequencing tools from the Horvath Lab☆45Jan 6, 2026Updated 7 months ago
- BLADE: Bayesian Log-normAl DEconvolution for enhanced in silico microdissection of bulk gene expression data☆29Apr 3, 2024Updated 2 years ago
- RADAR is devised to detect and visualize all possible twelve-types of RNA editing events from RNA-seq datasets.☆20Sep 2, 2025Updated 11 months ago
- ☆19May 15, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Information-based dimensionality reduction☆30Dec 14, 2024Updated last year
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆70Jul 9, 2026Updated last month
- A tool for detecting somatic variants in single cell data☆228Sep 15, 2024Updated last year
- Repository for the clone2vec python package☆24May 6, 2026Updated 3 months ago
- Python playground for cell-type-specific biology☆14Jul 10, 2026Updated last month
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆152Feb 20, 2025Updated last year
- R package for computing Association Plots☆17Nov 4, 2024Updated last year