gxiaolab / scAlleleLinks
☆38Updated last month
Alternatives and similar repositories for scAllele
Users that are interested in scAllele are comparing it to the libraries listed below
Sorting:
- ☆51Updated last year
- ☆32Updated 8 months ago
- scWGCNA☆61Updated 2 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆31Updated 2 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 11 months ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated 2 years ago
- ☆18Updated last year
- ☆34Updated 6 years ago
- ☆13Updated last year
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆33Updated 6 months ago
- R package of CSOmap(developing☆13Updated 3 years ago
- identifying disease critical cell types and programs from single cell RNAseq☆57Updated 3 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆43Updated 3 years ago
- A robust and accurate cell type classifier for single cell RNA-seq data☆17Updated 2 years ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆19Updated 3 weeks ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated last year
- ☆12Updated last year
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆22Updated last year
- R package to detect breakpoints and assign somies to scATAC-seq data☆40Updated last week
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆17Updated 3 years ago
- Network construction Algorithm☆22Updated last year
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆20Updated last year
- scRNA-seq cell type identification☆43Updated 6 years ago
- Single-cell Case Control Analysis☆52Updated last week
- ☆39Updated 4 years ago
- Functions for single cell data analysis☆32Updated 4 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated 10 months ago