gxiaolab / scAlleleView external linksLinks
☆40Aug 29, 2025Updated 5 months ago
Alternatives and similar repositories for scAllele
Users that are interested in scAllele are comparing it to the libraries listed below
Sorting:
- Combined clonality and transcriptome scRNAseq clustering method☆11Dec 3, 2022Updated 3 years ago
- ☆12Apr 4, 2023Updated 2 years ago
- A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.☆23Apr 16, 2019Updated 6 years ago
- scSNV Mapping tool for 10X Single Cell Data☆25Dec 19, 2025Updated last month
- ☆17Nov 24, 2024Updated last year
- cell type specific, trait-associated gene regulation☆29Mar 31, 2025Updated 10 months ago
- scPrisma is a spectral analysis method, for pseudotime reconstruction, informative genes inference, filtering, and enhancement of underly…☆19Mar 31, 2024Updated last year
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Jan 30, 2026Updated 2 weeks ago
- Pseudotime Analysis for Bulk Data☆19Aug 2, 2024Updated last year
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆58Jan 29, 2026Updated 2 weeks ago
- R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening …☆23Oct 3, 2023Updated 2 years ago
- SNV calling from single cell sequencing☆120Nov 11, 2024Updated last year
- Proteogenomics database-generation tool for protein haplotypes and variants☆11Jun 19, 2025Updated 7 months ago
- ☆37Updated this week
- A tool for detecting somatic variants in single cell data☆216Sep 15, 2024Updated last year
- ShinyCell2 is a lightweight R package for building interactive, shareable apps to explore single-cell multi-omics, scATAC-seq and spatial…☆51Jun 1, 2025Updated 8 months ago
- a bioinformatics tool for simulating single-cell genome sequencing data☆10Dec 19, 2019Updated 6 years ago
- Integrating temporal gene expression modalities for trajectory inference and disease prediction☆10Sep 20, 2022Updated 3 years ago
- An introductory course to eQTL analysis.☆10Jul 11, 2025Updated 7 months ago
- workflow to analysis of whole-exome-sequencing☆12Feb 12, 2020Updated 6 years ago
- scMalignantFinder is a Python package specially designed for analyzing cancer single-cell RNA-seq datasets to distinguish malignant cells…☆17Dec 13, 2025Updated 2 months ago
- Bioconductor components for general cancer genomics☆11Feb 5, 2023Updated 3 years ago
- ☆11Jul 8, 2024Updated last year
- An R package to calculate Dynamical Network Biomarkers (DNB).☆10Sep 16, 2022Updated 3 years ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆138Feb 20, 2025Updated 11 months ago
- Workflow for Sequenza, cellularity and ploidy☆26Aug 19, 2025Updated 5 months ago
- Next-Gen Sequencing tools from the Horvath Lab☆45Jan 6, 2026Updated last month
- digitalDLSorteR: An R package to deconvolute bulk RNA-Seq using scRNA-Seq data☆15Oct 31, 2024Updated last year
- ☆10Apr 6, 2022Updated 3 years ago
- Python playground for cell-type-specific biology☆12Jan 20, 2026Updated 3 weeks ago
- cEll tyPe enrIChment☆16Dec 11, 2022Updated 3 years ago
- MuDCoD: Multi-subject Dynamic Community Detection☆12Mar 18, 2025Updated 10 months ago
- SClineager: a Bayesian hierarchical model that performs lineage tracing of single cells based on genetic markers☆10Apr 30, 2024Updated last year
- curly braces in ggplot2.☆13Jul 14, 2025Updated 6 months ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Oct 25, 2024Updated last year
- Information-based dimensionality reduction☆29Dec 14, 2024Updated last year
- ☆32Oct 4, 2024Updated last year
- BLADE: Bayesian Log-normAl DEconvolution for enhanced in silico microdissection of bulk gene expression data☆29Apr 3, 2024Updated last year
- R package for computing Association Plots☆17Nov 4, 2024Updated last year