Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles
☆33Apr 4, 2025Updated 11 months ago
Alternatives and similar repositories for EpiSCORE
Users that are interested in EpiSCORE are comparing it to the libraries listed below
Sorting:
- This package contains a reference-based function to infer the proportions of a priori known cell subtypes present in a sample representin…☆55Mar 12, 2026Updated last week
- Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…☆20Jul 7, 2022Updated 3 years ago
- ☆12Dec 7, 2020Updated 5 years ago
- Cell clustering and communication network inference for single-cell transcriptomics☆15Sep 18, 2024Updated last year
- ☆20Jan 16, 2026Updated 2 months ago
- ☆33Feb 25, 2025Updated last year
- A computational tool for identification of 3D multi-modal spatial neighborhoods☆15Aug 1, 2025Updated 7 months ago
- ☆17Mar 11, 2023Updated 3 years ago
- Non-negative Independent Factor Analysis for single cell RNA-seq☆11Feb 25, 2022Updated 4 years ago
- deconvolution for RNAseq and bisulfite sequencing☆11Aug 17, 2020Updated 5 years ago
- Detect key Units in mosaic Tandem Repeats from representative reads from the same locus☆10Aug 2, 2023Updated 2 years ago
- scLearn:Learning for single cell assignment☆35Dec 13, 2024Updated last year
- LaTeX template of graduate Thesis [University of Chinese Academy of Sciences]☆12Nov 7, 2017Updated 8 years ago
- Ultrafast DNA methylation heterogeneity calculation from bisulfite alignments (Lee et al., PLOS Computational Biology. 2023)☆50Aug 25, 2025Updated 6 months ago
- Decomposition of heterogeneous DNA methylomes☆23Jul 10, 2024Updated last year
- R package for benchmarking single cell analysis methods☆32Oct 4, 2023Updated 2 years ago
- Generate Novel Insights from Gene Correlation Data☆14Jun 27, 2022Updated 3 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆22Mar 25, 2024Updated last year
- De novo reconstruction of cell interaction landscapes from single-cell spatial transcriptome data☆21Oct 11, 2022Updated 3 years ago
- ☆15Dec 9, 2019Updated 6 years ago
- ☆12Nov 6, 2023Updated 2 years ago
- SCDC☆46Jun 20, 2025Updated 9 months ago
- scMalignantFinder is a Python package specially designed for analyzing cancer single-cell RNA-seq datasets to distinguish malignant cells…☆17Feb 28, 2026Updated 3 weeks ago
- ☆23Jul 9, 2025Updated 8 months ago
- ☆16May 23, 2022Updated 3 years ago
- A single-cell RNAseq differential expression analysis approach in case-control study☆10Mar 6, 2022Updated 4 years ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆141Mar 13, 2026Updated last week
- A spatial omics data analysis tool that enables both unsupervised and supervised discovery of complex tissue cellular neighborhoods from …☆25Jan 31, 2026Updated last month
- DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring v…☆14May 7, 2024Updated last year
- Spatially-resolved Transcriptomics via Epitope Anchoring☆20Apr 1, 2024Updated last year
- Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)☆30May 16, 2025Updated 10 months ago
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆17Apr 20, 2024Updated last year
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆33Jan 30, 2026Updated last month
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Feb 27, 2019Updated 7 years ago
- ☆17Apr 9, 2021Updated 4 years ago
- simpler single cell RNAseq data Visualization☆10Feb 28, 2025Updated last year
- ☆18Jul 22, 2025Updated 7 months ago
- Spot pseudo-Imager on top of histology☆44Dec 12, 2025Updated 3 months ago
- scVI extension for unspliced RNA☆16May 18, 2025Updated 10 months ago