aet21 / EpiSCORELinks
Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles
☆32Updated 2 months ago
Alternatives and similar repositories for EpiSCORE
Users that are interested in EpiSCORE are comparing it to the libraries listed below
Sorting:
- A pipeline for scRNA-seq data analysis☆14Updated 2 months ago
- R package to detect breakpoints and assign somies to scATAC-seq data☆39Updated this week
- ☆31Updated 4 months ago
- ☆49Updated 10 months ago
- R package for analysing single cell data☆55Updated 2 years ago
- scWGCNA☆60Updated 2 years ago
- ☆41Updated 4 years ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆19Updated last year
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆30Updated 2 years ago
- ☆13Updated 10 months ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated last year
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆36Updated 2 weeks ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆38Updated 3 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 7 months ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- R package for SIGMA, a clusterability measure for scRNA-seq data☆12Updated 3 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆74Updated 2 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆26Updated 3 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆49Updated 4 years ago
- ☆34Updated last year
- ☆55Updated last year
- Accurate, deep, fast, and fully-automated scRNA-seq cell-type annotation☆12Updated 4 months ago
- Downstream analysis script for sci-fate (TF-gene linkage analysis / cell linkage analysis)☆24Updated 5 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- ☆32Updated 5 years ago
- comprehensive analysis of single-cell transcriptomics data☆22Updated 2 months ago
- Single-cell Orientation Tracing☆21Updated 3 years ago
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆21Updated 2 years ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆22Updated 6 months ago
- An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)☆36Updated 9 months ago