satijalab / Mixscale
☆18Updated 2 weeks ago
Alternatives and similar repositories for Mixscale:
Users that are interested in Mixscale are comparing it to the libraries listed below
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 6 months ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆25Updated 3 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 5 months ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆25Updated 6 months ago
- Single-Cell Inference of Class Switch Recombination☆19Updated last month
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 2 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 5 months ago
- ☆30Updated 3 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆42Updated last year
- Ordering gene-expression and functional events in single-cell experiments☆22Updated last year
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated 10 months ago
- ☆29Updated 2 years ago
- A unified interface to spatial transcriptomics deconvolution tools☆41Updated this week
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆40Updated 2 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- R package of CSOmap(developing☆14Updated 3 years ago
- ☆30Updated 2 years ago
- cell type specific, trait-associated gene regulation☆24Updated last month
- A robust and accurate cell type classifier for single cell RNA-seq data☆16Updated 2 years ago
- Code repository for the snRNA-seq cross-tissue atlas project☆20Updated 3 years ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- ☆40Updated 4 years ago
- Functions for single cell data analysis☆31Updated 3 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆76Updated last year
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆26Updated 3 years ago
- ☆49Updated 9 months ago
- MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via…☆22Updated last year