JiekaiLab / scTELinks
☆108Updated last year
Alternatives and similar repositories for scTE
Users that are interested in scTE are comparing it to the libraries listed below
Sorting:
- CUT&RUN and CUT&Tag data processing and analysis☆110Updated 5 months ago
- Publication Page for Satpathy*, Granja* et al 2019☆95Updated 5 years ago
- An open source and flexible pipeline to analysis high-throughput DNBelab C Series single-cell RNA datasets☆103Updated this week
- Basic workflow for ATAC-seq analysis☆82Updated last year
- scDIOR: Single cell data IO softwaRe☆144Updated 3 years ago
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆107Updated 4 months ago
- ☆71Updated last year
- Clustering scRNAseq by genotypes☆187Updated 8 months ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆139Updated 3 years ago
- ☆113Updated 4 months ago
- wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq☆61Updated last month
- A tool for detecting somatic variants in single cell data☆211Updated 10 months ago
- Tools for single-cell data processing☆125Updated last year
- Analysis pipeline for ATAC-seq data☆67Updated last year
- SCSA: cell type annotation for single-cell RNA-seq data☆91Updated 2 years ago
- Efficient genotyping bi-allelic SNPs on single cells☆146Updated last year
- SNV calling from single cell sequencing☆104Updated 8 months ago
- Haplotype-aware CNV analysis from single-cell RNA-seq☆190Updated 2 weeks ago
- chromatin Variability Across Regions (of the genome!)☆178Updated last year
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆95Updated 2 years ago
- AUCell: score single cells with gene regulatory networks☆160Updated last year
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆107Updated 3 months ago
- Analysis pipeline for ATAC-seq Data☆61Updated 3 years ago
- R implementation of MULTI-seq sample classification workflow☆64Updated last year
- ☆173Updated 2 months ago
- Significance analysis for clustering single-cell RNA-sequencing data☆117Updated 10 months ago
- ☆157Updated 2 weeks ago
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 5 years ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆112Updated 2 months ago
- Gene set scoring for single-cell data☆158Updated 2 months ago