☆119Apr 24, 2024Updated 2 years ago
Alternatives and similar repositories for scTE
Users that are interested in scTE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆33Jun 12, 2024Updated last year
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆22Apr 16, 2026Updated last month
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆32Dec 11, 2025Updated 5 months ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆33Jan 30, 2026Updated 3 months ago
- Quantification of transposable element expression using RNA-seq☆90Feb 8, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆21Nov 15, 2020Updated 5 years ago
- Single-cell Orientation Tracing☆22Jan 23, 2022Updated 4 years ago
- Multiome GRN inference.☆135Apr 10, 2026Updated last month
- Estimate locus specific human LINE-1 expression.☆40Jan 19, 2026Updated 4 months ago
- Single-cell Transposable Element Locus Level Analysis of scRNA Sequencing☆23Oct 28, 2025Updated 6 months ago
- glbase is a flexible and multifunctional toolkit allowing the user to perform many common analyses on ChIP-seq, microarray and RNA-seq da…☆13Apr 2, 2026Updated last month
- Software for Quantifying Interspersed Repeat Expression☆66Jun 20, 2022Updated 3 years ago
- ☆30Jul 15, 2021Updated 4 years ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆188Mar 27, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆36Apr 17, 2026Updated last month
- R package for single-cell comparative regulatory analysis☆10Jun 26, 2021Updated 4 years ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆31May 11, 2026Updated last week
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆451Feb 18, 2025Updated last year
- ☆17Apr 9, 2021Updated 5 years ago
- This is the alpha version of the CellOracle package☆453Apr 30, 2026Updated 3 weeks ago
- pycistarget is a python module to perform motif enrichment analysis in sets of regions with different tools and identify high confidence …☆19Apr 14, 2026Updated last month
- ☆31Apr 12, 2023Updated 3 years ago
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11Mar 31, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Reference mapping for single-cell genomics☆404Mar 21, 2026Updated 2 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆432May 11, 2026Updated last week
- An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)☆39Aug 22, 2024Updated last year
- scDIOR: Single cell data IO softwaRe☆156Feb 15, 2022Updated 4 years ago
- Heterogeneity Induced Pre-Processing tOol☆19Aug 15, 2021Updated 4 years ago
- Blastocyst-like structures generated from human pluripotent stem cells☆13Sep 25, 2022Updated 3 years ago
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆34Nov 28, 2025Updated 5 months ago
- SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.☆484Apr 5, 2024Updated 2 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Feb 14, 2022Updated 4 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆36Jan 4, 2022Updated 4 years ago
- ☆10Mar 11, 2025Updated last year
- R package to detect breakpoints and assign somies to scATAC-seq data☆43Dec 1, 2025Updated 5 months ago
- Haplotype-aware CNV analysis from single-cell RNA-seq, ATAC-seq, and multiome☆217Feb 4, 2026Updated 3 months ago
- SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances☆93Jan 26, 2023Updated 3 years ago
- Difference in Intercellular Communication from scRNA-seq data☆25Oct 14, 2025Updated 7 months ago
- High dimensional weighted gene co-expression network analysis☆473Mar 13, 2026Updated 2 months ago