minoda-lab / universcLinks
UniverSC: a flexible cross-platform single-cell data processing pipeline
☆45Updated last year
Alternatives and similar repositories for universc
Users that are interested in universc are comparing it to the libraries listed below
Sorting:
- ☆32Updated 4 months ago
- ☆55Updated 4 years ago
- A tool for removing doublets from single-cell RNA-seq data☆74Updated 4 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 4 years ago
- scWGCNA☆60Updated 2 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆77Updated 2 years ago
- ☆47Updated 4 months ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated last year
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆76Updated 2 months ago
- ☆27Updated 7 months ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆49Updated 4 years ago
- ☆59Updated 9 months ago
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- Create cisTarget databases☆50Updated 3 months ago
- Single Cell Analysis of Five'Ends☆50Updated last year
- Functional Inference of Gene Regulation☆44Updated 10 months ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated 2 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆81Updated 9 months ago
- ☆41Updated 3 weeks ago
- A tool that allows to get UMI counts from a single cell protein assay☆82Updated last month
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆40Updated 3 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆52Updated 3 years ago
- A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data☆16Updated 5 years ago
- ☆27Updated 10 months ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated 2 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆47Updated 10 months ago
- ☆44Updated last week
- ☆17Updated 11 months ago
- Capybara: A computational tool to measure cell identity and fate transitions☆59Updated 3 years ago