UniverSC: a flexible cross-platform single-cell data processing pipeline
☆50Feb 25, 2024Updated 2 years ago
Alternatives and similar repositories for universc
Users that are interested in universc are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆23Apr 17, 2020Updated 6 years ago
- The scripts used for analyzing JAX mouse dataset☆29Oct 24, 2024Updated 2 years ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆33Jan 30, 2026Updated 9 months ago
- A pipeline for scRNA analysis under HPC☆11Jul 15, 2024Updated 2 years ago
- Demultiplex Illumina FASTQ files☆10May 23, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- scTriangulate is a Python package to mix-and-match conflicting clustering results in single cell analysis and generate reconciled cluster…☆41Mar 30, 2026Updated 7 months ago
- Non-parametric density inference for single-cell analysis.☆77Sep 24, 2026Updated last month
- Code for the BRAIN Initiative Cell Census Network (BICCN) - RF1 Tilgner☆23May 1, 2024Updated 2 years ago
- A tool for removing doublets from single-cell RNA-seq data☆76Dec 2, 2020Updated 5 years ago
- ☆60Jan 2, 2024Updated 2 years ago
- Interactive single cell RNA-seq analysis webserver!☆10Mar 15, 2023Updated 3 years ago
- A Shiny web app for mapping datasets using Seurat v4☆151May 22, 2026Updated 5 months ago
- Analaysis for the batch correction paper☆12Apr 26, 2025Updated last year
- A pipeline for processing single cell RNA-seq data generated with the SmartSeq2 protocol.☆17Apr 26, 2021Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Tools for single-cell data processing☆138May 27, 2024Updated 2 years ago
- Advanced steps of the OSCA book☆17Aug 26, 2026Updated 2 months ago
- ☆49Jan 28, 2026Updated 9 months ago
- MOJITOO: a fast and universal method for integration of multimodal single cell data☆13Oct 23, 2024Updated 2 years ago
- A repository for benchmarking spatial deconvolution and mapping tools☆39May 13, 2025Updated last year
- ☆13Nov 20, 2023Updated 2 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Mar 30, 2024Updated 2 years ago
- ☆12Apr 21, 2023Updated 3 years ago
- Combined clonality and transcriptome scRNAseq clustering method☆11Dec 3, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆10Jul 3, 2026Updated 3 months ago
- https://molecular-neurogenetics.github.io/truster/☆12Jul 14, 2025Updated last year
- TemporalVAE: dual-objective VAE for time prediction in single cells☆13Sep 13, 2025Updated last year
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆30Updated this week
- ☆17Jul 6, 2023Updated 3 years ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆85Jan 23, 2025Updated last year
- ☆13Jan 27, 2025Updated last year
- Paulsen, Velasco, Kedaigle, and Pigioni et. al., Nature 2022☆14Oct 26, 2020Updated 6 years ago
- an open source data platform, developed in the Korcsmaros Group to store, analyze and integrate bioinformatics data☆12Feb 19, 2026Updated 8 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆12Jul 25, 2026Updated 3 months ago
- ☆19Mar 8, 2023Updated 3 years ago
- Cell Annotation using Machine Learning-based method for the presence of Unknown cells (CAMLU)☆13May 19, 2025Updated last year
- Some tools for plotting single-cell data☆178May 17, 2025Updated last year
- ☆17Jul 12, 2024Updated 2 years ago
- Single cell analysis in the browser☆156Sep 24, 2026Updated last month
- MACA: Marker-based automatic cell-type annotation for single cell expression data☆26Jul 12, 2023Updated 3 years ago