UniverSC: a flexible cross-platform single-cell data processing pipeline
☆49Feb 25, 2024Updated 2 years ago
Alternatives and similar repositories for universc
Users that are interested in universc are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆23Apr 17, 2020Updated 6 years ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆33Jan 30, 2026Updated 5 months ago
- The scripts used for analyzing JAX mouse dataset☆26Oct 24, 2024Updated last year
- Advanced steps of the OSCA book☆14Apr 27, 2026Updated 2 months ago
- A repository for benchmarking spatial deconvolution and mapping tools☆36May 13, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A tool for removing doublets from single-cell RNA-seq data☆75Dec 2, 2020Updated 5 years ago
- ☆12Apr 21, 2023Updated 3 years ago
- ☆59Jan 2, 2024Updated 2 years ago
- ☆12Nov 20, 2023Updated 2 years ago
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11Mar 31, 2026Updated 3 months ago
- MOJITOO: a fast and universal method for integration of multimodal single cell data☆12Oct 23, 2024Updated last year
- Interactive single cell RNA-seq analysis webserver!☆10Mar 15, 2023Updated 3 years ago
- ☆17Jul 12, 2024Updated last year
- ☆28Mar 12, 2026Updated 3 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- An end-to-end computational pipeline for large Perturb-seq screens☆15Apr 25, 2025Updated last year
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆122Jan 22, 2024Updated 2 years ago
- Combined clonality and transcriptome scRNAseq clustering method☆11Dec 3, 2022Updated 3 years ago
- Analaysis for the batch correction paper☆12Apr 26, 2025Updated last year
- https://molecular-neurogenetics.github.io/truster/☆12Jul 14, 2025Updated 11 months ago
- ☆10Jun 26, 2026Updated last week
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆30Mar 19, 2026Updated 3 months ago
- ☆49Jan 28, 2026Updated 5 months ago
- Access public biological ontologies.☆14Aug 7, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆40Jun 6, 2023Updated 3 years ago
- Cell Annotation using Machine Learning-based method for the presence of Unknown cells (CAMLU)☆13May 19, 2025Updated last year
- Coarse-graining of large single-cell RNA-seq data into metacells☆102Apr 16, 2026Updated 2 months ago
- an open source data platform, developed in the Korcsmaros Group to store, analyze and integrate bioinformatics data☆12Feb 19, 2026Updated 4 months ago
- scTriangulate is a Python package to mix-and-match conflicting clustering results in single cell analysis and generate reconciled cluster…☆38Mar 30, 2026Updated 3 months ago
- Repository for the Anczukow-Lab splicing pipeline☆17Mar 17, 2025Updated last year
- MACA: Marker-based automatic cell-type annotation for single cell expression data☆25Jul 12, 2023Updated 2 years ago
- A Shiny web app for mapping datasets using Seurat v4☆148May 22, 2026Updated last month
- Cellsnake tool main repo☆36Feb 22, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing☆35Nov 4, 2023Updated 2 years ago
- R API and htmlwidget for Vitessce☆45Aug 13, 2025Updated 10 months ago
- Non-parametric density inference for single-cell analysis.☆75Jun 29, 2026Updated last week
- Shiny Interactive Web Apps for Single-Cell Data☆214Apr 24, 2025Updated last year
- wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq☆92Apr 22, 2026Updated 2 months ago
- Tools for single-cell data processing☆135May 27, 2024Updated 2 years ago
- ☆19Mar 8, 2023Updated 3 years ago