Alternatives and similar repositories for TGFM

Users that are interested in TGFM are comparing it to the libraries listed below

• ylaboratory / seismic
  Seismic R package. Discover cell type-trait associations in minutes for GWAS and single-cell RNA-sequencing data
  ☆19Updated 3 months ago
• wuyangf7 / OPERA
  This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…
  ☆36Updated last year
• opain / eQTL_to_TWAS
  Methods for converting eQTL summary statistics into TWAS SNP-weights
  ☆13Updated 3 months ago
• marcoralab / MRcovid
  ☆13Updated 3 years ago
• daiqile96 / OTTERS
  A powerful TWAS framework leveraging summary-level reference data
  ☆31Updated 6 months ago
• opain / Calculating-FUSION-TWAS-weights-pipeline
  This is a pipeline for calculating weights for TWAS
  ☆32Updated 3 years ago
• ZikunY / CARMA
  GWAS genetics Fine-mapping method
  ☆25Updated 11 months ago
• bhattacharya-a-bt / isotwas
  ☆23Updated 2 months ago
• mglev1n / locusplotr
  Create Regional Association Plots
  ☆12Updated last month
• StatFunGen / pecotmr
  Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.
  ☆30Updated last week
• ckhunsr1 / PUMICE
  PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics
  ☆12Updated 2 years ago
• dingruofan / xQTLbiolinks
  xQTLbiolinks: a comprehensive and scalable tool for integrative analysis of molecular QTLs
  ☆37Updated 8 months ago
• hakyimlab / scPrediXcan
  ☆31Updated 3 months ago
• gusevlab / stratAS
  🌓 Allele specific analyses across cell states and conditions
  ☆10Updated 2 years ago
• RHReynolds / LDSCforRyten
  S-LDSC scripts for use on MR server.
  ☆10Updated 4 years ago
• Marijn-Schipper / FLAMES
  FLAMES: Accurate gene prioritization in GWAS loci
  ☆45Updated 7 months ago
• juliedwhite / miamiplot
  An R package for creating ggplot2 based miami plots.
  ☆17Updated 7 months ago
• jokamoto97 / INTACT
  Integration of TWAS and Colocalization Analysis
  ☆17Updated 11 months ago
• borangao / MESuSiE
  ☆20Updated 2 months ago
• cnfoley / mrclust
  R package for investigating clustered heterogeneity in Mendelian randomization (MR) analyses.
  ☆17Updated 3 years ago
• segrelabgenomics / QTLEnrich
  Assessing enrichment of complex disease or trait associations among QTLs
  ☆15Updated 5 years ago
• cuelee / pleio
  ☆19Updated 2 months ago
• ChongWuLab / SUMMIT
  Summary-level Unified Method for Modeling Integrated Transcriptome
  ☆10Updated 2 years ago
• jrs95 / gassocplot2
  Regional association plots
  ☆25Updated last year
• elizabethdorans / pgBoost
  ☆15Updated last month
• bsml320 / scGWAS
  A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …
  ☆26Updated 3 years ago
• scbaca / cwas
  Workflow for performing cistrome-wide associations studies
  ☆10Updated 3 years ago
• bogdanlab / RHOGE
  Estimate genetic correlation using predicted expression
  ☆22Updated 7 years ago
• rhhao / csMR
  Perform cell-stratified MR analysis through integrating GWAS and QTL data
  ☆33Updated 2 months ago
• szhang1112 / scPRS
  ☆23Updated 5 months ago