Alternatives and similar repositories for HNOCA-tools

Users that are interested in HNOCA-tools are comparing it to the libraries listed below

• caleblareau / maegatk
  Mitochondrial Alteration Enrichment and Genome Analysis Toolkit
  ☆21Updated last year
• mardzix / bcd_nano_CUTnTag
  ☆12Updated last year
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆30Updated 6 months ago
• dbrg77 / ISSAAC-seq
  ☆17Updated 2 years ago
• veltenlab / mitoClone
  ☆12Updated 4 years ago
• WWXkenmo / ICAnet
  Independent Component Analysis decipher functional modules for better cell clustering and annotation
  ☆17Updated 3 years ago
• lueckenlab / single-cell-papers-trends
  Trends in single cell papers
  ☆16Updated last year
• theislab / moslin
  Code, data and analysis for moslin.
  ☆14Updated 11 months ago
• pachterlab / CGCCP_2023
  scVI extension for unspliced RNA
  ☆16Updated 4 months ago
• FertigLab / pycogaps
  python API to the CoGAPS NMF package
  ☆19Updated 4 months ago
• jranek / EVI
  Integrating temporal gene expression modalities for trajectory inference and disease prediction
  ☆10Updated 3 years ago
• MarioniLab / oor_design_reproducibility
  ☆16Updated 2 years ago
• ChenWeiyan / LandSCENT
  Landscape Single Cell Entropy
  ☆20Updated 5 years ago
• xichensf / magical
  R and MATLAB scripts for MAGICAL
  ☆11Updated last year
• lhqing / wmb2023
  Code and data sharing of Liu et al. 2023 manuscript
  ☆15Updated 2 years ago
• sdentro / copykat_pipeline
  ☆13Updated last year
• satijalab / Mixscale
  ☆20Updated 5 months ago
• JunyueCaoLab / EasySci
  Computational pipeline to process EasySci-RNA data.
  ☆21Updated last year
• dpeerlab / progressive-plasticity-crc-metastasis
  Notebooks for generating figures in "Progressive Plasticity During Colorectal Cancer Metastasis"
  ☆16Updated 9 months ago
• quadbio / organoid_regulomes
  Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids
  ☆29Updated 2 years ago
• Teichlab / snp2cell
  cell type specific, trait-associated gene regulation
  ☆27Updated 5 months ago
• Zhen-Miao / PICsnATAC
  Paired Insertion Counting for snATAC-seq data
  ☆17Updated 4 months ago
• LaughneyLab / ContactTracing_tutorial
  ☆17Updated last year
• Caochris / SCOTIA
  ☆20Updated 2 months ago
• mattjones315 / KPTracer-release
  Code & utilities for the manuscript "Lineage Recording Reveals the Phylodynamics, Plasticity and Paths of Tumor Evolution"
  ☆12Updated 2 years ago
• klarman-cell-observatory / HTAPP-Pipelines
  A record of the analysis pipelines used to create the HTAPP data
  ☆33Updated 5 months ago
• liuqivandy / SpaGene
  ☆24Updated 2 years ago
• stephenslab / gbcd
  R package for generalized binary covariance decomposition.
  ☆10Updated 2 months ago
• davemcg / scEiaD
  Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas
  ☆26Updated last year
• Molecular-Neurogenetics / truster
  https://molecular-neurogenetics.github.io/truster/
  ☆11Updated 2 months ago