cozygene / TCAView external linksLinks
☆19Feb 17, 2021Updated 4 years ago
Alternatives and similar repositories for TCA
Users that are interested in TCA are comparing it to the libraries listed below
Sorting:
- ☆24Dec 17, 2020Updated 5 years ago
- Workflow for performing cistrome-wide associations studies☆11Jul 25, 2022Updated 3 years ago
- A collection of commonly used formats for quick lookup.☆14Jan 12, 2026Updated last month
- A faster and angrier package for EBMF.☆12Dec 10, 2025Updated 2 months ago
- DCC/DAC methylation pipeline source☆57Jul 29, 2020Updated 5 years ago
- ☆13Feb 2, 2023Updated 3 years ago
- In this study, we perform systematic comparative analysis of seven widely-used SNV-calling methods, including SAMtools, the GATK Best Pra…☆16Oct 16, 2019Updated 6 years ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆21Jan 26, 2026Updated 2 weeks ago
- ☆21Jul 10, 2025Updated 7 months ago
- A utility to map bisulfite sequencing data to the Illumina 450K methylation CpG set☆18Feb 12, 2016Updated 10 years ago
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆17Apr 4, 2022Updated 3 years ago
- A robust and accurate cell type classifier for single cell RNA-seq data☆17Mar 15, 2023Updated 2 years ago
- ☆23Mar 20, 2024Updated last year
- ☆53Mar 9, 2022Updated 3 years ago
- R wrapper for utilizing the SigProfilerMatrixGenerator framework☆20Jan 29, 2026Updated 2 weeks ago
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆47May 3, 2023Updated 2 years ago
- ☆25Jan 18, 2022Updated 4 years ago
- Pathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)☆20Jun 16, 2022Updated 3 years ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆21Jan 4, 2023Updated 3 years ago
- Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model☆22Oct 9, 2020Updated 5 years ago
- Trajectory Inference Based on SNP information.☆24Jun 19, 2024Updated last year
- Multiscale embedded gene co-expression network analysis☆57Jan 9, 2024Updated 2 years ago
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆28May 15, 2024Updated last year
- A collection of functions for working with DNA methylation microarrays (quality control, pre-processing, LC estimation, ...)☆27Jul 28, 2025Updated 6 months ago
- R code to work with the NIH RePORTER API☆11Apr 16, 2025Updated 9 months ago
- A set of color palettes I like (or can at least tolerate)☆25Mar 28, 2024Updated last year
- ☆33Jun 12, 2024Updated last year
- Literature mining for T cell relations☆23Aug 5, 2022Updated 3 years ago
- A fast and accurate deconvolution algorithm based on regularized matrix completion algorithm (ENIGMA)☆27Jun 21, 2023Updated 2 years ago
- Enhancer Linking by Methylation/Expression Relationship (ELMER) is package to identify tumor-specific changes in DNA methylation within d…☆25Feb 4, 2026Updated last week
- Descriptive probabilistic marker gene approach to single-cell pseudotime inference☆31Nov 29, 2019Updated 6 years ago
- cfDNA cell type of origin estimation☆34Oct 19, 2023Updated 2 years ago
- Scalable Ultra-Sparse Bayesian PCA☆31Feb 13, 2024Updated 2 years ago
- ☆14Jul 1, 2025Updated 7 months ago
- epigenome analysis to rank transcription factors☆33Feb 2, 2023Updated 3 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Apr 13, 2021Updated 4 years ago
- DMR Identification Tool☆34Jul 6, 2023Updated 2 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆76Feb 27, 2023Updated 2 years ago
- Devel repository for bsseq☆39Feb 6, 2026Updated last week