An R library for conducting analyses on COMPASS data.
☆16Jun 10, 2021Updated 4 years ago
Alternatives and similar repositories for compassR
Users that are interested in compassR are comparing it to the libraries listed below
Sorting:
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Feb 22, 2025Updated last year
- Single-Cell Inference of Class Switch Recombination☆20Feb 11, 2026Updated 3 weeks ago
- Unsupervised Inference of Developmental Directions for Single Cells☆23Jan 12, 2024Updated 2 years ago
- ☆14Oct 11, 2019Updated 6 years ago
- scGNN (single cell graph neural networks) for single cell clustering and imputation using graph neural networks☆11Aug 4, 2020Updated 5 years ago
- R toolkit for inference and analysis of pathway-mediated cell-cell communication chain from single-cell transcriptomics☆38Mar 10, 2025Updated 11 months ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆29Aug 16, 2021Updated 4 years ago
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆121Oct 31, 2025Updated 4 months ago
- R package IReNA☆29Nov 13, 2024Updated last year
- R package for generalized binary covariance decomposition.☆15Jul 13, 2025Updated 7 months ago
- A computational tool for identification of 3D multi-modal spatial neighborhoods☆15Aug 1, 2025Updated 7 months ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆33Jan 30, 2026Updated last month
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆143Nov 10, 2023Updated 2 years ago
- Capybara: A computational tool to measure cell identity and fate transitions☆61May 23, 2022Updated 3 years ago
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆17Apr 20, 2024Updated last year
- Implementation of MaSigPro for scRNA-Seq Data☆19Jul 31, 2024Updated last year
- Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data☆17Apr 15, 2025Updated 10 months ago
- glbase is a flexible and multifunctional toolkit allowing the user to perform many common analyses on ChIP-seq, microarray and RNA-seq da…☆12Jan 16, 2026Updated last month
- CellRank's reproducibility repository.☆16Jan 13, 2022Updated 4 years ago
- ☆15Apr 2, 2023Updated 2 years ago
- Learning meaningful representations of genes☆21Jul 7, 2025Updated 7 months ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆79Jul 25, 2025Updated 7 months ago
- Deconvolution of spatial transcriptomics at single-cell resolution☆20Sep 19, 2024Updated last year
- Single-cell Case Control Analysis☆53Feb 26, 2026Updated last week
- ☆145Apr 19, 2025Updated 10 months ago
- An optimal transport-based algorithm for inferring cell trajectories of spatial transcriptomics.☆36Mar 30, 2025Updated 11 months ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Jan 15, 2023Updated 3 years ago
- ☆23Jul 9, 2025Updated 7 months ago
- scripts associated with NAFLD-NASH project☆28May 23, 2024Updated last year
- ☆25Oct 10, 2025Updated 4 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆58Jan 29, 2026Updated last month
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆22Mar 25, 2024Updated last year
- BulkSignalR☆27Jul 24, 2025Updated 7 months ago
- Containerized cancer subtype prediction tools for gene expression, miRNA, DNA methylation, somatic mutations and copy number variation.☆32Apr 9, 2025Updated 10 months ago
- ☆21Aug 20, 2024Updated last year
- Single Cell Oriented Reconstruction of PANDA-based Individually Optimized Networks☆27Feb 25, 2026Updated last week
- ☆36Nov 26, 2025Updated 3 months ago
- SNV calling from single cell sequencing☆119Nov 11, 2024Updated last year
- Tools for assessing clustering robustness☆31Jan 29, 2026Updated last month