An R library for conducting analyses on COMPASS data.
☆17Jun 10, 2021Updated 5 years ago
Alternatives and similar repositories for compassR
Users that are interested in compassR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆127Oct 31, 2025Updated 8 months ago
- Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data☆18Apr 15, 2025Updated last year
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Feb 22, 2025Updated last year
- BulkSignalR☆27Jun 23, 2026Updated last month
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆31Aug 16, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- scGNN (single cell graph neural networks) for single cell clustering and imputation using graph neural networks☆10Aug 4, 2020Updated 5 years ago
- A computational tool for identification of 3D multi-modal spatial neighborhoods☆16Aug 1, 2025Updated 11 months ago
- Implementation of MaSigPro for scRNA-Seq Data☆20Jul 31, 2024Updated last year
- ☆13Apr 16, 2021Updated 5 years ago
- Learning meaningful representations of genes☆21Jul 7, 2025Updated last year
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆83Jul 25, 2025Updated 11 months ago
- Unsupervised Inference of Developmental Directions for Single Cells☆26Jan 12, 2024Updated 2 years ago
- single cell Flux Estimation Analysis (scFEA)☆156Nov 10, 2023Updated 2 years ago
- a simple R data package for curated cancer pathway-specific gene lists☆13Mar 31, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆17Apr 2, 2023Updated 3 years ago
- R toolkit for inference and analysis of pathway-mediated cell-cell communication chain from single-cell transcriptomics☆37Mar 10, 2025Updated last year
- Single-Cell Inference of Class Switch Recombination☆24Jun 19, 2026Updated last month
- ☆90Jun 29, 2024Updated 2 years ago
- ☆11Jun 25, 2024Updated 2 years ago
- glbase is a flexible and multifunctional toolkit allowing the user to perform many common analyses on ChIP-seq, microarray and RNA-seq da…☆13Updated this week
- ☆24Jul 9, 2025Updated last year
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆76Feb 17, 2020Updated 6 years ago
- ☆16Sep 29, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆14Oct 11, 2019Updated 6 years ago
- ☆44Nov 26, 2025Updated 7 months ago
- Codes for the scPLC project☆73Dec 2, 2022Updated 3 years ago
- R package for generalized binary covariance decomposition.☆16Jul 13, 2025Updated last year
- Beyondcell is a computational methodology for identifying tumour cell subpopulations with distinct drug responses in single-cell RNA-seq …☆61Sep 17, 2024Updated last year
- R package IReNA☆31Nov 13, 2024Updated last year
- ☆12May 24, 2024Updated 2 years ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆33Jan 30, 2026Updated 5 months ago
- R package for processing of GWAS output☆17Jul 9, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆13Sep 30, 2024Updated last year
- Detecting and dissecting anomalous anatomic regions in spatial transcriptomics with STANDS☆11May 18, 2026Updated 2 months ago
- CellRank's reproducibility repository.☆17Jan 13, 2022Updated 4 years ago
- simpler single cell RNAseq data Visualization☆12Feb 28, 2025Updated last year
- ☆12Jun 11, 2023Updated 3 years ago
- R package for tissue-specific gene enrichment☆16Mar 10, 2022Updated 4 years ago
- FitDevo: accurate inference of single-cell developmental potential using sample-specific gene weight☆18Apr 7, 2024Updated 2 years ago