Genotyping lots of samples with big pangenomes
☆11Oct 30, 2025Updated 8 months ago
Alternatives and similar repositories for genotypify
Users that are interested in genotypify are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Jul 30, 2025Updated 11 months ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- A toolkit for exploring regions of variation in pangenomes☆15Jun 12, 2026Updated last month
- Everything but the kitchen sink☆13Feb 6, 2025Updated last year
- COsine SImilarity-based Genotyper using pangenomes☆36Jun 4, 2026Updated last month
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆15Jun 29, 2021Updated 5 years ago
- ☆18Jan 29, 2025Updated last year
- GFA visualization tool - Rust reimplementation of odgi viz☆15May 2, 2026Updated 2 months ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 8 months ago
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- Rust implementation of Flavia95's GFAtoVCF☆16Jan 17, 2022Updated 4 years ago
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated 2 years ago
- Rust package for constructing and analyzing phylogenies. (unpolished & unmaintained)☆15May 1, 2025Updated last year
- ☆21Dec 13, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆14Apr 5, 2025Updated last year
- ☆10Jan 18, 2023Updated 3 years ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 11 months ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆38Apr 28, 2026Updated 2 months ago
- ☆19May 10, 2023Updated 3 years ago
- ☆102Apr 22, 2024Updated 2 years ago
- Statistics and analysis for variation graphs☆52Dec 17, 2024Updated last year
- A viewer for multiple alignment format (MAF) files in JBrowse 2☆14Jun 3, 2026Updated last month
- Unzip assembly graphs with Hi-C data and/or long reads.☆29May 7, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Identification of transposable element families from pangenome polymorphisms☆57Jun 8, 2026Updated last month
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆21Apr 9, 2025Updated last year
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆14Apr 28, 2026Updated 2 months ago
- The PanGenome Graph Builder☆17Jul 17, 2024Updated 2 years ago
- A web-based, interactive pangenome visualization tool☆21Apr 10, 2023Updated 3 years ago
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated last year
- implicit pangenome graph☆109Jul 8, 2026Updated last week
- Genotyping of copy number sensitive allele-specific haplotypes☆29Jun 18, 2026Updated last month
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Aug 1, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆46Oct 13, 2024Updated last year
- ☆17Mar 17, 2023Updated 3 years ago
- alignment to variation graph inducer☆163Jun 17, 2026Updated last month
- plane sweep filtering genome alignments☆24May 23, 2026Updated last month
- HitSV: Maximizing discovery of structural variants across sequencing technologies☆27Jul 15, 2026Updated last week
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆40Oct 29, 2025Updated 8 months ago
- Strand and WGD aware syntenic gene identification☆16Oct 16, 2025Updated 9 months ago