cschin / pgr-tk
PGR-TK: Pangenome Research Tool Kit
☆14Updated last month
Alternatives and similar repositories for pgr-tk:
Users that are interested in pgr-tk are comparing it to the libraries listed below
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆42Updated last week
- Kmer Analysis of Pileups for Genotyping☆29Updated last month
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆28Updated 5 months ago
- ☆17Updated last year
- Tumour-only somatic mutation calling using long reads☆26Updated 6 months ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆20Updated 9 months ago
- ☆20Updated 2 months ago
- Jupyter Notebooks Using PGR-TK for various human pangenome analysis tasks☆15Updated 2 years ago
- Working space for the GIAB TR benchmarking project☆21Updated 6 months ago
- Improved Phased Assembler☆28Updated 3 years ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- lossless nanopore pod5 <=> s/blow5 file conversion☆40Updated 3 weeks ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Updated 7 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated last month
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆26Updated 4 months ago
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago
- ☆29Updated 2 years ago
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆44Updated last year
- Compute N50/NG50 and auN/auNG☆32Updated last year
- ☆32Updated 2 years ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆25Updated last week
- Computational Pangenomics☆17Updated 2 years ago
- ☆30Updated 5 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆36Updated last year
- ☆41Updated 2 months ago
- A tool for de novo clustering of long transcriptomic reads☆15Updated 2 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆35Updated 5 months ago
- ☆21Updated 5 years ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago