lace up GFA files using panSN path name sub-ranges to coordinate the lacing
☆14Jul 30, 2025Updated 9 months ago
Alternatives and similar repositories for gfalace
Users that are interested in gfalace are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 6 months ago
- ☆19May 10, 2023Updated 3 years ago
- A toolkit for exploring regions of variation in pangenomes☆14May 8, 2026Updated last week
- COsine SImilarity-based Genotyper using pangenomes☆34Feb 13, 2026Updated 3 months ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Differential quantification of alternative splicing events on spliced pangenome graphs☆16Jan 30, 2026Updated 3 months ago
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated last year
- Infering ancestral synteny with hierarchical orthologous groups☆37Oct 17, 2025Updated 7 months ago
- Statistics and analysis for variation graphs☆51Dec 17, 2024Updated last year
- Pangenome Mutation-Annotated Networks☆43Apr 9, 2026Updated last month
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆12Apr 5, 2025Updated last year
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 6 months ago
- ☆18Jan 29, 2025Updated last year
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆15Jun 29, 2021Updated 4 years ago
- Rust implementation of Flavia95's GFAtoVCF☆16Jan 17, 2022Updated 4 years ago
- ☆17Mar 17, 2023Updated 3 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Feb 15, 2021Updated 5 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆38May 4, 2026Updated 2 weeks ago
- implicit pangenome graph☆103Apr 24, 2026Updated 3 weeks ago
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆20Apr 9, 2025Updated last year
- Rust package for constructing and analyzing phylogenies. (unpolished & unmaintained)☆15May 1, 2025Updated last year
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆23Feb 16, 2026Updated 3 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆21Apr 15, 2024Updated 2 years ago
- ☆102Apr 22, 2024Updated 2 years ago
- pangenome analyses for complete genomes of great apes (and gibbon)☆20Oct 12, 2024Updated last year
- Inferring natural selection by comparative population genomic analysis across species☆27Oct 31, 2023Updated 2 years ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆21Feb 13, 2026Updated 3 months ago
- The PanGenome Graph Builder☆17Jul 17, 2024Updated last year
- Genealogical Estimation of Variant Age (GEVA)☆33Sep 30, 2021Updated 4 years ago
- Identification of transposable element families from pangenome polymorphisms☆56Jun 3, 2025Updated 11 months ago
- Simulating paired-end short sequencing reads from circular and linear genomes☆15May 14, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆43Apr 18, 2026Updated last month
- Long read aligner for cyclic and acyclic pangenome graphs☆41Dec 20, 2023Updated 2 years ago
- Multiple sequence alignment of long tandem repeats☆27May 12, 2026Updated last week
- A web-based, interactive pangenome visualization tool☆21Apr 10, 2023Updated 3 years ago
- recompute GFA link overlaps☆26Sep 14, 2022Updated 3 years ago
- longcallR is a tool for SNP calling, haplotype phasing, and allele-specific analysis with long-read RNA-seq data.☆92Apr 16, 2026Updated last month
- ☆29Aug 7, 2025Updated 9 months ago