Alternatives and similar repositories for pgr-tk-notebooks

Users that are interested in pgr-tk-notebooks are comparing it to the libraries listed below

• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆33Updated 4 years ago
• twlab / methylGrapher
  Methylation analysis pipeline for genome graph
  ☆14Updated 6 months ago
• ACEnglish / kanpig
  Kmer Analysis of Pileups for Genotyping
  ☆35Updated 2 weeks ago
• JBerthelier / ParasiTE
  Invertory of TE-gene isoforms
  ☆13Updated 2 years ago
• hitbc / gcSV
  ☆21Updated 9 months ago
• Walfred-MA / Ctyper
  Genotyping of copy number sensitive allele-specific haplotypes
  ☆27Updated last month
• idanefroni / Conservatory
  Identification of conserved non-coding sequences in plants
  ☆31Updated 2 months ago
• zstephens / telogator
  A method for measuring chromosome-specific telomere length from long reads
  ☆22Updated last year
• PacificBiosciences / HiFi-somatic-WDL
  Tumor-normal variant calling workflow using HiFi reads
  ☆24Updated last week
• fritzsedlazeck / SVCollector
  Method to optimally select samples for validation and resequencing
  ☆29Updated 4 years ago
• mktle / colorSV
  somatic SV calling on matched tumor-normal co-assembly graphs
  ☆22Updated last year
• Xinglab / TideHunter
  TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
  ☆21Updated last year
• ACEnglish / adotto
  Working space for the GIAB TR benchmarking project
  ☆23Updated last year
• pangenome / HPRCyear1v2genbank
  building a human pangenome from the HPRCy1v2 genbank accessioned assemblies
  ☆15Updated 2 years ago
• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆31Updated 6 months ago
• human-pangenomics / hprc-tutorials
  ☆19Updated last year
• mobinasri / secphase
  Phasing reads with secondary alignments
  ☆21Updated last year
• vgteam / sv-genotyping-paper
  ☆31Updated 6 years ago
• njdbickhart / GoatAssemblyScripts
  A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly
  ☆11Updated 8 years ago
• UMCUGenetics / COLO829_somaticSV
  Scripts and files used in the generation of the COLO829 somatic SV truthset.
  ☆13Updated 3 years ago
• ryought / hic_hiker
  HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C
  ☆26Updated 4 years ago
• ablab / stringdecomposer
  Tool for decomposition centromeric assemblies and long reads into monomers
  ☆37Updated 3 years ago
• oscarlr / MsPAC
  Phase reads, assemble haplotypes and detect SVs
  ☆19Updated 5 years ago
• zhixingfeng / iGDA
  Detect and phase minor SNVs from long-read sequencing data
  ☆14Updated 3 years ago
• KolmogorovLab / hapdiff
  SV calling for diploid assemblies
  ☆30Updated last year
• holstegelab / MotifScope
  A tool for motif annotation and visualization in tandem repeats.
  ☆11Updated 6 months ago
• lh3 / TRF-mod
  Tandem Repeats Finder: a program to analyze DNA sequences
  ☆18Updated 4 months ago
• maickrau / ribotin
  ☆38Updated 4 months ago
• noecochetel / North_American_Vitis_Pangenome
  Construct and Analyze the North American Vitis pangenome
  ☆27Updated 4 months ago
• AnimalGenomicsETH / bovine-graphs
  Integrate multiple genome assemblies into a pangenome graph
  ☆35Updated 3 years ago