Alternatives and similar repositories for pgr-tk-notebooks

Users that are interested in pgr-tk-notebooks are comparing it to the libraries listed below

• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆31Updated 4 years ago
• zstephens / telogator
  A method for measuring chromosome-specific telomere length from long reads
  ☆22Updated last year
• ACEnglish / kanpig
  Kmer Analysis of Pileups for Genotyping
  ☆32Updated 3 weeks ago
• njdbickhart / GoatAssemblyScripts
  A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly
  ☆11Updated 8 years ago
• mktle / colorSV
  somatic SV calling on matched tumor-normal co-assembly graphs
  ☆22Updated last year
• hitbc / gcSV
  ☆21Updated 6 months ago
• twlab / methylGrapher
  Methylation analysis pipeline for genome graph
  ☆12Updated 3 months ago
• human-pangenomics / hprc-tutorials
  ☆17Updated last year
• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆26Updated 2 months ago
• noecochetel / North_American_Vitis_Pangenome
  Construct and Analyze the North American Vitis pangenome
  ☆24Updated last week
• oscarlr / MsPAC
  Phase reads, assemble haplotypes and detect SVs
  ☆19Updated 4 years ago
• ablab / stringdecomposer
  Tool for decomposition centromeric assemblies and long reads into monomers
  ☆36Updated 2 years ago
• mobinasri / secphase
  Phasing reads with secondary alignments
  ☆20Updated 8 months ago
• marbl / training
  Genome Assembly 102
  ☆15Updated 4 months ago
• TcbfGroup / Tcbf
  A pipeline for identifying conserved topologically associating domain boundaries among multiple species.
  ☆16Updated 2 months ago
• holstegelab / MotifScope
  A tool for motif annotation and visualization in tandem repeats.
  ☆11Updated 3 months ago
• lh3 / TRF-mod
  Tandem Repeats Finder: a program to analyze DNA sequences
  ☆16Updated 3 weeks ago
• dfguan / pin_hic
  A Hi-C scaffolding method
  ☆22Updated 3 years ago
• AnimalGenomicsETH / bovine-graphs
  Integrate multiple genome assemblies into a pangenome graph
  ☆35Updated 3 years ago
• vgteam / sv-genotyping-paper
  ☆31Updated 5 years ago
• glogsdon1 / sunk-based_assembly
  ☆15Updated 4 years ago
• xiaochuanle / Falign
  An effective alignment tool for long noisy 3C data (e.g. Pore-C and C-walk)
  ☆12Updated 10 months ago
• lh3 / minisv
  Lightweight mosaic/somatic SV caller for long reads (WIP)
  ☆29Updated 8 months ago
• vpc-ccg / sedef
  Identification of segmental duplications in the genome
  ☆27Updated 3 years ago
• pangenome / HPRCyear1v2genbank
  building a human pangenome from the HPRCy1v2 genbank accessioned assemblies
  ☆14Updated 2 years ago
• Markusjsommer / TD2
  TD2
  ☆15Updated 2 months ago
• WHops / NAHRwhals
  R package and wrapper functions for identifying serial structural variations from genome assemblies
  ☆27Updated 11 months ago
• ChenHuaLab / HaploSweep
  HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.
  ☆11Updated 11 months ago
• Xinglab / TideHunter
  TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
  ☆20Updated last year
• DessimozLab / OMAnnotator
  Consensus genome annotation using OMA
  ☆26Updated 2 months ago