displays multiple genomic sequences in the form of a tube map
☆229Nov 12, 2025Updated 9 months ago
Alternatives and similar repositories for sequenceTubeMap
Users that are interested in sequenceTubeMap are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆102Apr 22, 2024Updated 2 years ago
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆250Aug 21, 2026Updated last week
- alignment to variation graph inducer☆165Jul 29, 2026Updated last month
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆56May 17, 2022Updated 4 years ago
- Sequence-to-graph mapper and graph generator☆487Aug 11, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- tools for working with genome variation graphs☆1,334Updated this week
- Graph realignment tools for structural variants☆171Dec 8, 2022Updated 3 years ago
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆76Feb 19, 2019Updated 7 years ago
- Pangenome-based genome inference☆179Aug 18, 2026Updated last week
- Pangenome graphs (review article on graph-based pangenomic methods)☆73Apr 15, 2020Updated 6 years ago
- the pangenome graph builder☆513Jul 24, 2026Updated last month
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆119Jun 6, 2021Updated 5 years ago
- Genome inference from a population reference graph☆96Apr 1, 2025Updated last year
- Modular Multi-scale Integrated Genome Graph Browser☆100Jul 23, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- implicit pangenome graph☆110Aug 8, 2026Updated 3 weeks ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆138Aug 12, 2026Updated 2 weeks ago
- Official home of genome aligner based upon notion of Cactus graphs☆703Updated this week
- Graphical Fragment Assembly (GFA) Format Specification☆222Aug 21, 2024Updated 2 years ago
- GFA visualizer, GPU-accelerated using Vulkan☆80Aug 2, 2022Updated 4 years ago
- Constructing a pangenome gene graph☆212Aug 11, 2025Updated last year
- Synteny and Rearrangement Identifier☆485Jul 1, 2026Updated last month
- Highly customizable, ambiguity-aware dotplots for visual sequence analyses☆126Apr 20, 2026Updated 4 months ago
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆60Sep 6, 2025Updated 11 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆253Dec 16, 2025Updated 8 months ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆222Updated this week
- Filter of Pairwise Alignement☆45Jan 31, 2022Updated 4 years ago
- Jasmine: SV Merging Across Samples☆259Dec 20, 2024Updated last year
- Phased structural variant discovery in pangenomes☆43Jul 27, 2026Updated last month
- Variant annotation and merging pipeline☆44Jul 22, 2025Updated last year
- ☆18Jan 29, 2025Updated last year
- SV calling for diploid assemblies☆32Mar 22, 2024Updated 2 years ago
- Identify and find telomeres, or telomeric repeats in a genome.☆174Nov 24, 2025Updated 9 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Identification of transposable element families from pangenome polymorphisms☆57Aug 11, 2026Updated 2 weeks ago
- A genome completeness evaluation tool based on miniprot☆262Aug 17, 2026Updated last week
- A Strategy for Building and Using a Human Reference Pangenome☆71May 29, 2020Updated 6 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆58Mar 7, 2025Updated last year
- Tool to plot synteny and structural rearrangements between genomes☆354Jul 27, 2026Updated last month
- Show pangenome graphs in an easy way☆61Aug 7, 2025Updated last year
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆299May 28, 2026Updated 3 months ago