Alternatives and similar repositories for sequenceTubeMap

Users that are interested in sequenceTubeMap are comparing it to the libraries listed below

• marbl / SALSA
  SALSA: A tool to scaffold long read assemblies with Hi-C data
  ☆188Updated last year
• marbl / ModDotPlot
  ☆175Updated last month
• ComparativeGenomicsToolkit / hal
  Hierarchical Alignment Format
  ☆173Updated 3 months ago
• parklab / bamsnap
  ☆122Updated 4 months ago
• adamewing / methylartist
  Tools for plotting methylation data in various ways
  ☆165Updated 2 weeks ago
• jtlovell / GENESPACE
  ☆222Updated 10 months ago
• timkahlke / LongRead_tutorials
  Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data
  ☆143Updated 4 months ago
• rrwick / Deepbinner
  a signal-level demultiplexer for Oxford Nanopore reads
  ☆126Updated 4 years ago
• Illumina / paragraph
  Graph realignment tools for structural variants
  ☆164Updated 3 years ago
• lh3 / gfatools
  Tools for manipulating sequence graphs in the GFA and rGFA formats
  ☆242Updated last year
• PacificBiosciences / pbmm2
  A minimap2 frontend for PacBio native data formats
  ☆207Updated 3 weeks ago
• asl / BandageNG
  a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
  ☆150Updated last week
• medvedevgroup / SibeliaZ
  A fast whole-genome aligner based on de Bruijn graphs
  ☆153Updated 5 months ago
• eblerjana / pangenie
  Pangenome-based genome inference
  ☆149Updated last week
• PacificBiosciences / pbsv
  pbsv - PacBio structural variant (SV) calling and analysis tools
  ☆159Updated 9 months ago
• hillerlab / TOGA
  TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…
  ☆200Updated 2 weeks ago
• marcelauliano / MitoHiFi
  Find, circularise and annotate mitogenome from PacBio assemblies
  ☆190Updated 7 months ago
• OpenGene / fastplong
  Ultra-fast preprocessing and quality control for long-read sequencing data
  ☆200Updated 3 months ago
• tpoorten / dotPlotly
  Generate an interactive dot plot from mummer or minimap alignments
  ☆210Updated last year
• PacificBiosciences / pb-assembly
  PacBio Assembly Tool Suite: Reads in ⇨ Assembly out
  ☆118Updated 5 years ago
• lh3 / pangene
  Constructing a pangenome gene graph
  ☆200Updated 4 months ago
• epi2me-labs / wf-human-variation
  ☆142Updated 2 weeks ago
• eldariont / svim
  Structural Variant Identification Method using Long Reads
  ☆179Updated 4 years ago
• dentearl / mafTools
  Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.
  ☆109Updated 3 years ago
• daewoooo / SVbyEye
  ☆144Updated last month
• mkirsche / Jasmine
  Jasmine: SV Merging Across Samples
  ☆232Updated 11 months ago
• PacificBiosciences / DevNet
  The DevNet project on github stores the PacBio DevNet website.
  ☆116Updated 7 years ago
• nanoporetech / pipeline-structural-variation
  Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
  ☆114Updated 4 years ago
• rrwick / Long-read-assembler-comparison
  Benchmarking of long-read assembly tools for bacterial whole genomes
  ☆172Updated 4 years ago
• yfukasawa / LongQC
  LongQC is a tool for the data quality control of the PacBio and ONT long reads.
  ☆177Updated 2 years ago