Alternatives and similar repositories for sequenceTubeMap:

Users that are interested in sequenceTubeMap are comparing it to the libraries listed below

• marbl / SALSA
  SALSA: A tool to scaffold long read assemblies with Hi-C data
  ☆183Updated 9 months ago
• schneebergerlab / plotsr
  Tool to plot synteny and structural rearrangements between genomes
  ☆295Updated this week
• lh3 / gfatools
  Tools for manipulating sequence graphs in the GFA and rGFA formats
  ☆218Updated 6 months ago
• marbl / Winnowmap
  Long read / genome alignment software
  ☆273Updated 3 months ago
• adamewing / methylartist
  Tools for plotting methylation data in various ways
  ☆140Updated last month
• marbl / ModDotPlot
  ☆131Updated 3 weeks ago
• TobyBaril / EarlGrey
  Earl Grey: A fully automated TE curation and annotation pipeline
  ☆155Updated 2 weeks ago
• Nextomics / NextPolish
  Fast and accurately polish the genome generated by long reads.
  ☆217Updated last month
• jtlovell / GENESPACE
  ☆198Updated 3 weeks ago
• hewm2008 / NGenomeSyn
  Any Way to Show Multi genomic Synteny
  ☆173Updated 3 months ago
• kcleal / gw
  Genome browser and variant annotation
  ☆293Updated this week
• parklab / bamsnap
  ☆119Updated 3 months ago
• nanoporetech / modkit
  A bioinformatics tool for working with modified bases
  ☆171Updated 2 weeks ago
• rrwick / Long-read-assembler-comparison
  Benchmarking of long-read assembly tools for bacterial whole genomes
  ☆170Updated 3 years ago
• paoloshasta / shasta
  De novo assembly from Oxford Nanopore reads.
  ☆78Updated last week
• malonge / RaGOO
  RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
  ☆172Updated 3 years ago
• tpoorten / dotPlotly
  Generate an interactive dot plot from mummer or minimap alignments
  ☆195Updated last year
• wdecoster / nanopack
  An overview of all nanopack tools
  ☆232Updated last year
• novoalab / EpiNano
  Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)
  ☆113Updated 7 months ago
• lh3 / pangene
  Constructing a pangenome gene graph
  ☆179Updated 7 months ago
• marcelauliano / MitoHiFi
  Find, circularise and annotate mitogenome from PacBio assemblies
  ☆174Updated last month
• yfukasawa / LongQC
  LongQC is a tool for the data quality control of the PacBio and ONT long reads.
  ☆156Updated last year
• NAL-i5K / GFF3toolkit
  Python programs for processing GFF3 files
  ☆96Updated 10 months ago
• sanger-pathogens / circlator
  A tool to circularize genome assemblies
  ☆236Updated 10 months ago
• waveygang / wfmash
  base-accurate DNA sequence alignments using WFA and mashmap3
  ☆182Updated this week
• biocorecrg / master_of_pores
  Nextflow pipeline for analysis of direct RNA Nanopore reads
  ☆101Updated 2 months ago
• HuiyangYu / PanDepth
  An ultra-fast and efficient genomic tool for coverage calculation
  ☆140Updated 5 months ago
• nanoporetech / pipeline-structural-variation
  Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
  ☆114Updated 3 years ago
• Dfam-consortium / RepeatModeler
  De-Novo Repeat Discovery Tool
  ☆200Updated last month
• marbl / verkko
  Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…
  ☆318Updated this week