displays multiple genomic sequences in the form of a tube map
☆229Nov 12, 2025Updated 10 months ago
Alternatives and similar repositories for sequenceTubeMap
Users that are interested in sequenceTubeMap are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆102Apr 22, 2024Updated 2 years ago
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆251Sep 16, 2026Updated 3 weeks ago
- alignment to variation graph inducer☆165Jul 29, 2026Updated 2 months ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆56May 17, 2022Updated 4 years ago
- Sequence-to-graph mapper and graph generator☆490Aug 11, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- tools for working with genome variation graphs☆1,343Updated this week
- Graph realignment tools for structural variants☆172Dec 8, 2022Updated 3 years ago
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆76Feb 19, 2019Updated 7 years ago
- Pangenome-based genome inference☆181Sep 15, 2026Updated 3 weeks ago
- Pangenome graphs (review article on graph-based pangenomic methods)☆73Apr 15, 2020Updated 6 years ago
- the pangenome graph builder☆519Jul 24, 2026Updated 2 months ago
- Genome inference from a population reference graph☆96Apr 1, 2025Updated last year
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆120Jun 6, 2021Updated 5 years ago
- Modular Multi-scale Integrated Genome Graph Browser☆100Jul 23, 2026Updated 2 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- implicit pangenome graph☆114Updated this week
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆139Sep 8, 2026Updated last month
- Official home of genome aligner based upon notion of Cactus graphs☆713Updated this week
- Graphical Fragment Assembly (GFA) Format Specification☆222Aug 21, 2024Updated 2 years ago
- GFA visualizer, GPU-accelerated using Vulkan☆80Aug 2, 2022Updated 4 years ago
- Constructing a pangenome gene graph☆212Aug 11, 2025Updated last year
- Synteny and Rearrangement Identifier☆491Jul 1, 2026Updated 3 months ago
- Highly customizable, ambiguity-aware dotplots for visual sequence analyses☆125Apr 20, 2026Updated 5 months ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆254Dec 16, 2025Updated 9 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆62Sep 6, 2025Updated last year
- base-accurate DNA sequence alignments using WFA and mashmap3☆225Sep 28, 2026Updated last week
- Filter of Pairwise Alignement☆45Jan 31, 2022Updated 4 years ago
- Jasmine: SV Merging Across Samples☆261Dec 20, 2024Updated last year
- Phased structural variant discovery in pangenomes☆43Sep 18, 2026Updated 3 weeks ago
- Variant annotation and merging pipeline☆44Jul 22, 2025Updated last year
- ☆18Jan 29, 2025Updated last year
- SV calling for diploid assemblies☆32Mar 22, 2024Updated 2 years ago
- Identify and find telomeres, or telomeric repeats in a genome.☆177Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Identification of transposable element families from pangenome polymorphisms☆57Aug 11, 2026Updated last month
- A genome completeness evaluation tool based on miniprot☆267Aug 17, 2026Updated last month
- A Strategy for Building and Using a Human Reference Pangenome☆71May 29, 2020Updated 6 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆58Mar 7, 2025Updated last year
- Tool to plot synteny and structural rearrangements between genomes☆357Jul 27, 2026Updated 2 months ago
- Show pangenome graphs in an easy way☆61Aug 7, 2025Updated last year
- ☆11Dec 9, 2022Updated 3 years ago