Alternatives and similar repositories for gfagino

Users that are interested in gfagino are comparing it to the libraries listed below

• tolkit / gfatk
  A plant organellar Graphical Fragment Assembly toolkit
  ☆16Updated 10 months ago
• chfi / gfainject
  ☆16Updated 2 years ago
• chfi / pafview
  ☆17Updated 6 months ago
• StephenHwang / MEMO
  MEMO: MEM-based pangenome indexing for k-mer queries
  ☆18Updated last year
• 6br / hgb
  A read alignment visualization library for long reads
  ☆11Updated 3 years ago
• ekg / pafcheck
  PAF (pairwise alignment format) validator based on extended CIGAR strings
  ☆14Updated 3 weeks ago
• Flavia95 / VGpop
  Population genetics analysis on VG
  ☆16Updated 4 years ago
• lrobidou / KFC
  ☆18Updated 5 months ago
• pangenome / pgvf-spec
  Pangenome Graph Variation Format (PGVF)
  ☆20Updated 4 years ago
• ban-m / jtk
  JTK -- a regional diploid genome assembler
  ☆24Updated 9 months ago
• algbio / matchtigs
  Minimum plain text representation of kmer sets
  ☆17Updated 6 months ago
• jmonlong / manu-vggafannot
  Efficient indexing and querying of annotations in a pangenome graph
  ☆10Updated last month
• ekg / pafplot
  base-level dotplots from PAF alignments
  ☆26Updated 2 weeks ago
• nlhepler / spoa-rs
  A rust wrapper for the spoa C++ partial order alignment library
  ☆10Updated 2 months ago
• hanzou666 / msa2gfa
  A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg
  ☆12Updated 6 years ago
• HopedWall / rs-gfatovcf
  Rust implementation of Flavia95's GFAtoVCF
  ☆16Updated 3 years ago
• at-cg / PanAligner
  Long read aligner for cyclic and acyclic pangenome graphs
  ☆39Updated last year
• pangenome / gafpack
  convert variation graph alignments to coverage maps over nodes
  ☆24Updated last month
• ekg / fastix
  Prefix-renaming FASTA records really fast.
  ☆17Updated last year
• ldenti / palss
  ☆21Updated last month
• Kuanhao-Chao / Wheeler_Graph_Toolkit
  🔎 wheeler graph recognition algorithm, visualization and generation
  ☆19Updated 2 years ago
• marbl / training
  Genome Assembly 102
  ☆15Updated 3 months ago
• at-cg / minichain
  Long-read aligner to pangenome graphs
  ☆26Updated last year
• mbhall88 / skc
  Shared k-mer content between two genomes
  ☆18Updated 2 years ago
• rchikhi / rust-seq2kminmers
  Iterate k-min-mers from a DNA sequence in Rust
  ☆13Updated last year
• cschin / wavefront-aln
  A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring
  ☆15Updated 2 years ago
• ArcInstitute / mmr
  A minimap2 implementation with binseq inputs
  ☆15Updated last week
• prophyle / prophasm
  ProphAsm – a rapid computation of simplitigs directly from k-mer sets
  ☆26Updated 2 years ago
• marschall-lab / strand-seq-graph-phasing
  ☆11Updated 2 months ago
• fawaz-dabbaghieh / gfa_subgraphs
  Extracts subgraphs or components from a graph in GFA format
  ☆23Updated 8 months ago