pangenome / gfaginoLinks
your friendly pangenome graph genotyper
☆10Updated 2 years ago
Alternatives and similar repositories for gfagino
Users that are interested in gfagino are comparing it to the libraries listed below
Sorting:
- ☆17Updated 9 months ago
- A plant organellar Graphical Fragment Assembly toolkit☆16Updated last month
- ☆17Updated 2 years ago
- ☆19Updated 8 months ago
- Population genetics analysis on VG☆16Updated 4 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Updated 6 years ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated last year
- Minimum plain text representation of kmer sets☆16Updated 9 months ago
- base-level dotplots from PAF alignments☆27Updated last month
- convert variation graph alignments to coverage maps over nodes☆26Updated last week
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆12Updated last month
- Long read aligner for cyclic and acyclic pangenome graphs☆39Updated last year
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Updated 2 months ago
- JTK -- a regional diploid genome assembler☆25Updated last year
- AlfaPang builds pangenome graphs without alignments or references.☆13Updated 4 months ago
- Pangenome Graph Variation Format (PGVF)☆19Updated 5 years ago
- Genome Assembly 102☆14Updated 6 months ago
- Shared k-mer content between two genomes☆18Updated 2 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆21Updated 7 months ago
- Long-read aligner to pangenome graphs☆27Updated last year
- Efficient indexing and querying of annotations in a pangenome graph☆10Updated 4 months ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Updated 2 years ago
- A rust wrapper for the spoa C++ partial order alignment library☆10Updated 4 months ago
- A read alignment visualization library for long reads☆10Updated 3 years ago
- Rust implementation of Flavia95's GFAtoVCF☆16Updated 3 years ago
- Extracts subgraphs or components from a graph in GFA format☆25Updated 11 months ago
- ☆22Updated last month
- Prefix-renaming FASTA records really fast.☆16Updated last year
- ☆13Updated 2 months ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Updated last year