Alternatives and similar repositories for gfagino

Users that are interested in gfagino are comparing it to the libraries listed below

• nlhepler / spoa-rs
  A rust wrapper for the spoa C++ partial order alignment library
  ☆10Updated last month
• tolkit / gfatk
  A plant organellar Graphical Fragment Assembly toolkit
  ☆16Updated 9 months ago
• chfi / gfainject
  ☆16Updated 2 years ago
• pangenome / pgvf-spec
  Pangenome Graph Variation Format (PGVF)
  ☆20Updated 4 years ago
• StephenHwang / MEMO
  MEMO: MEM-based pangenome indexing for k-mer queries
  ☆18Updated last year
• ekg / pafcheck
  PAF (pairwise alignment format) validator based on extended CIGAR strings
  ☆14Updated 10 months ago
• ban-m / jtk
  JTK -- a regional diploid genome assembler
  ☆24Updated 8 months ago
• hanzou666 / msa2gfa
  A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg
  ☆12Updated 6 years ago
• jmonlong / manu-vggafannot
  Efficient indexing and querying of annotations in a pangenome graph
  ☆10Updated last month
• 6br / hgb
  A read alignment visualization library for long reads
  ☆11Updated 2 years ago
• at-cg / PanAligner
  Long read aligner for cyclic and acyclic pangenome graphs
  ☆39Updated last year
• T2T-apes / ape_pangenome
  pangenome analyses for complete genomes of great apes (and gibbon)
  ☆17Updated 9 months ago
• HopedWall / rs-gfatovcf
  Rust implementation of Flavia95's GFAtoVCF
  ☆16Updated 3 years ago
• at-cg / minichain
  Long-read aligner to pangenome graphs
  ☆26Updated last year
• algbio / matchtigs
  Minimum plain text representation of kmer sets
  ☆17Updated 5 months ago
• pangenome / gafpack
  convert variation graph alignments to coverage maps over nodes
  ☆24Updated 3 weeks ago
• Kuanhao-Chao / Wheeler_Graph_Toolkit
  🔎 wheeler graph recognition algorithm, visualization and generation
  ☆19Updated 2 years ago
• ekg / fastix
  Prefix-renaming FASTA records really fast.
  ☆17Updated last year
• Adamtaranto / TIRmite
  Map TIR-pHMM models to genomic sequences for annotation of MITES and complete DNA-Transposons.
  ☆10Updated 3 months ago
• ldenti / palss
  ☆21Updated 3 weeks ago
• Walfred-MA / Ctyper
  Genotyping of copy number sensitive allele-specific haplotypes
  ☆15Updated last week
• marbl / training
  Genome Assembly 102
  ☆14Updated 2 months ago
• MoinSebi / gfa2bin
  ☆24Updated 7 months ago
• mbhall88 / skc
  Shared k-mer content between two genomes
  ☆18Updated 2 years ago
• lrobidou / KFC
  ☆18Updated 5 months ago
• Flavia95 / VGpop
  Population genetics analysis on VG
  ☆17Updated 4 years ago
• ASLeonard / pandrawer
  Everything but the kitchen sink
  ☆11Updated 5 months ago
• AntonBankevich / jumboDB
  De Bruijn graph construction for large k.
  ☆18Updated 3 years ago
• chfi / rs-gfa-utils
  ☆16Updated 4 years ago
• jmonlong / pangenome-evaluation
  Pipeline to evaluate pangenomes, e.g. from the variation it contains or how well reads map
  ☆10Updated 3 years ago