Alternatives and similar repositories for gfagino

Users that are interested in gfagino are comparing it to the libraries listed below

• tolkit / gfatk
  A plant organellar Graphical Fragment Assembly toolkit
  ☆16Updated last month
• chfi / pafview
  ☆17Updated 8 months ago
• chfi / gfainject
  ☆17Updated 2 years ago
• Flavia95 / VGpop
  Population genetics analysis on VG
  ☆16Updated 4 years ago
• StephenHwang / MEMO
  MEMO: MEM-based pangenome indexing for k-mer queries
  ☆18Updated last year
• ekg / pafcheck
  PAF (pairwise alignment format) validator based on extended CIGAR strings
  ☆15Updated 2 months ago
• pangenome / gafpack
  convert variation graph alignments to coverage maps over nodes
  ☆24Updated 3 months ago
• nlhepler / spoa-rs
  A rust wrapper for the spoa C++ partial order alignment library
  ☆10Updated 4 months ago
• lrobidou / KFC
  ☆18Updated 7 months ago
• pangenome / pgvf-spec
  Pangenome Graph Variation Format (PGVF)
  ☆19Updated 5 years ago
• hanzou666 / msa2gfa
  A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg
  ☆11Updated 6 years ago
• dubssieg / rs-pancat-compare
  Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.
  ☆12Updated last week
• AdamCicherski / AlfaPang
  AlfaPang builds pangenome graphs without alignments or references.
  ☆12Updated 3 months ago
• at-cg / PanAligner
  Long read aligner for cyclic and acyclic pangenome graphs
  ☆39Updated last year
• jmonlong / manu-vggafannot
  Efficient indexing and querying of annotations in a pangenome graph
  ☆10Updated 3 months ago
• ekg / pafplot
  base-level dotplots from PAF alignments
  ☆27Updated 3 weeks ago
• 6br / hgb
  A read alignment visualization library for long reads
  ☆10Updated 3 years ago
• HopedWall / rs-gfatovcf
  Rust implementation of Flavia95's GFAtoVCF
  ☆16Updated 3 years ago
• ban-m / jtk
  JTK -- a regional diploid genome assembler
  ☆25Updated 11 months ago
• at-cg / minichain
  Long-read aligner to pangenome graphs
  ☆27Updated last year
• mbhall88 / skc
  Shared k-mer content between two genomes
  ☆18Updated 2 years ago
• rchikhi / rust-seq2kminmers
  Iterate k-min-mers from a DNA sequence in Rust
  ☆13Updated last year
• richarddurbin / syng
  syncmer graphs, and perhaps other sorts of sequence graphs
  ☆21Updated 6 months ago
• marbl / training
  Genome Assembly 102
  ☆14Updated 5 months ago
• Walfred-MA / Ctyper
  Genotyping of copy number sensitive allele-specific haplotypes
  ☆16Updated last week
• fawaz-dabbaghieh / gfa_subgraphs
  Extracts subgraphs or components from a graph in GFA format
  ☆24Updated 10 months ago
• AntonBankevich / jumboDB
  De Bruijn graph construction for large k.
  ☆17Updated 4 years ago
• MoinSebi / gfa2bin
  ☆25Updated 2 months ago
• marschall-lab / strand-seq-graph-phasing
  ☆13Updated 4 months ago
• bo1929 / krepp
  A k-mer-based maximum likelihood method for estimating distances of reads to genomes and phylogenetic placement.
  ☆16Updated 3 weeks ago