pangenome / gfaginoView external linksLinks
your friendly pangenome graph genotyper
☆10Feb 6, 2023Updated 3 years ago
Alternatives and similar repositories for gfagino
Users that are interested in gfagino are comparing it to the libraries listed below
Sorting:
- Rust implementation of Flavia95's GFAtoVCF☆16Jan 17, 2022Updated 4 years ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆23Sep 12, 2025Updated 5 months ago
- ☆15Jun 29, 2021Updated 4 years ago
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 5 months ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 3 months ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 3 months ago
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated 8 months ago
- CPANG19 - Computational PANGenomics (2019)☆12May 7, 2020Updated 5 years ago
- A read alignment visualization library for long reads☆10Aug 6, 2022Updated 3 years ago
- A toolkit for exploring regions of variation in pangenomes☆14Updated this week
- Kmer Analysis of Pileups for Genotyping☆35Jan 30, 2026Updated 2 weeks ago
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality …☆11Mar 1, 2022Updated 3 years ago
- An accurate aligner of long reads to a variation graph, based on co-linear chaining☆34May 23, 2025Updated 8 months ago
- convert variation graph alignments to coverage maps over nodes☆27Jan 21, 2026Updated 3 weeks ago
- strange cross-platform, performance-oriented and interactive pangenome and large graph visualization☆45Updated this week
- GBZ file format for pangenome graphs☆45Updated this week
- Population genetics analysis on VG☆17Apr 22, 2021Updated 4 years ago
- 🔎 wheeler graph recognition algorithm, visualization and generation☆21Jul 7, 2023Updated 2 years ago
- ☆101Apr 22, 2024Updated last year
- Rust bindings to the wavefront algorithm C implementation☆17Sep 20, 2022Updated 3 years ago
- Shared k-mer content between two genomes☆19Jun 21, 2023Updated 2 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Jul 21, 2019Updated 6 years ago
- Long-read aligner to pangenome graphs☆29May 20, 2024Updated last year
- ☆29Mar 27, 2024Updated last year
- Statistics and analysis for variation graphs☆49Dec 17, 2024Updated last year
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆36May 14, 2025Updated 9 months ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated last year
- GFA parser in Rust☆30May 26, 2023Updated 2 years ago
- ☆18Jan 29, 2025Updated last year
- Predict genic elements as splice sites, exons or genes, along eukaryotic DNA sequences☆18Jan 19, 2023Updated 3 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Feb 15, 2021Updated 5 years ago
- extract MSAs from genome variation graphs☆34Sep 20, 2020Updated 5 years ago
- Reference bias measuring toolkit☆20Apr 18, 2025Updated 9 months ago
- a lexicographically-based GTF/GFF sorter☆38Apr 27, 2025Updated 9 months ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆54Mar 7, 2025Updated 11 months ago
- A tool to detect structural variant☆17Mar 27, 2023Updated 2 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆40Dec 20, 2023Updated 2 years ago
- alignment to variation graph inducer☆157Jan 20, 2026Updated 3 weeks ago