pangenome / gfaginoLinks
your friendly pangenome graph genotyper
☆10Updated 2 years ago
Alternatives and similar repositories for gfagino
Users that are interested in gfagino are comparing it to the libraries listed below
Sorting:
- A plant organellar Graphical Fragment Assembly toolkit☆16Updated 4 months ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Updated 5 months ago
- ☆18Updated 11 months ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Updated 6 years ago
- ☆17Updated 2 years ago
- Pangenome Graph Variation Format (PGVF)☆19Updated 5 years ago
- convert variation graph alignments to coverage maps over nodes☆26Updated last week
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Updated 7 months ago
- base-level dotplots from PAF alignments☆29Updated 4 months ago
- A rust wrapper for the spoa C++ partial order alignment library☆10Updated 7 months ago
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆28Updated 3 weeks ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Updated 2 months ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Updated last year
- Population genetics analysis on VG☆16Updated 4 years ago
- JTK -- a regional diploid genome assembler☆25Updated last year
- Long read aligner for cyclic and acyclic pangenome graphs☆40Updated 2 years ago
- ☆13Updated 8 months ago
- Minimum plain text representation of kmer sets☆16Updated 11 months ago
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆12Updated 3 months ago
- Rust implementation of Flavia95's GFAtoVCF☆16Updated 4 years ago
- ☆11Updated 3 years ago
- Long-read aligner to pangenome graphs☆29Updated last year
- A read alignment visualization library for long reads☆10Updated 3 years ago
- Genome Assembly 102☆17Updated 9 months ago
- Extracts subgraphs or components from a graph in GFA format☆24Updated last year
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆12Updated 9 months ago
- ☆23Updated 4 months ago
- convert CHAIN format to PAF format☆15Updated last year
- syncmer graphs, and perhaps other sorts of sequence graphs☆24Updated 3 weeks ago
- Prefix-renaming FASTA records really fast.☆17Updated last year