Alternatives and similar repositories for CHERRY

Users that are interested in CHERRY are comparing it to the libraries listed below

• ziyewang / COMEBin
  ☆61Updated last year
• ablab / viralVerify
  viralVerify: viral contig verification tool
  ☆72Updated 4 years ago
• HIT-ImmunologyLab / DBSCAN-SWA
  ☆33Updated last year
• AnantharamanLab / vRhyme
  Binning Virus Genomes from Metagenomes
  ☆66Updated 3 years ago
• linxingchen / cobra
  A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…
  ☆76Updated last month
• DrKaiyangZheng / VITAP
  The viral taxonomic assignment pipeline
  ☆28Updated 7 months ago
• HubertTang / PLASMe
  ☆29Updated last year
• RasmussenLab / phamb
  Downstream processing of VAMB binning for Viral Elucidation
  ☆50Updated last year
• snayfach / MAGpurify
  Improvement of metagenome-assembled genomes
  ☆54Updated 5 years ago
• KennthShang / PhaMer
  Accurate identification of bacteriophages from metagenomic data using Transformer
  ☆22Updated 11 months ago
• GreyGuoweiChen / VirBot
  VirBot: a protein-based RNA virus detector for metagenomic data
  ☆34Updated last year
• michaelkyu / PlasX
  PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture
  ☆38Updated 3 years ago
• ziyewang / MetaBinner
  ☆58Updated last year
• Carrion-lab / bacLIFE
  ☆49Updated 3 weeks ago
• RyanCook94 / inphared
  Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.
  ☆72Updated 6 months ago
• endixk / ezaai
  EzAAI - High Throughput Prokaryotic AAI Calculator
  ☆44Updated 2 months ago
• gbouras13 / plassembler
  Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates
  ☆77Updated 3 weeks ago
• BigDataBiology / argNorm
  ARG normalization by mapping to the ARO ontology.
  ☆59Updated 2 months ago
• jolespin / veba
  A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…
  ☆97Updated last week
• snayfach / UHGV
  Unified Human Gut Virome Catalog
  ☆36Updated last month
• alexmsalmeida / virsearch
  Snakemake workflow to detect and classify viruses in metagenome assemblies.
  ☆19Updated last year
• zoubohao / Deepurify
  Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.
  ☆22Updated 4 months ago
• AnantharamanLab / ViWrap
  A wrapper to identify, bin, classify, and predict host-viral relationship for viruses
  ☆79Updated 9 months ago
• soedinglab / WIsH
  Predict prokaryotic host for phage metagenomic sequences
  ☆52Updated last year
• Kalan-Lab / zol
  zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
  ☆63Updated last week
• dimiboeckaerts / PhageRBPdetection
  Detection of phage RBPs based on protein domains and machine learning
  ☆25Updated 8 months ago
• gatech-genemark / MetaGeneMark-2
  MetaGeneMark-2: Improved Gene Prediction in Metagenomes
  ☆22Updated last year
• metagentools / MetaCoAG
  🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs
  ☆66Updated last year
• songweizhi / MarkerMAG
  Linking MAGs with 16S rRNA marker genes
  ☆25Updated 8 months ago
• allind / EukDetect
  ☆53Updated 3 months ago