KennthShang / CHERRYLinks
Host prediction for phages
☆25Updated 8 months ago
Alternatives and similar repositories for CHERRY
Users that are interested in CHERRY are comparing it to the libraries listed below
Sorting:
- Accurate identification of bacteriophages from metagenomic data using Transformer☆22Updated 8 months ago
- The viral taxonomic assignment pipeline☆26Updated 4 months ago
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆63Updated 9 months ago
- viralVerify: viral contig verification tool☆71Updated 3 years ago
- ☆55Updated last year
- Improvement of metagenome-assembled genomes☆53Updated 5 years ago
- HOTSPOT is a hierarchical host prediction tool for plasmid contigs using Transformer.☆10Updated last year
- ☆32Updated last year
- EzAAI - High Throughput Prokaryotic AAI Calculator☆42Updated last week
- ☆56Updated last year
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆29Updated last year
- Linking MAGs with 16S rRNA marker genes☆24Updated 5 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated last year
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated 2 weeks ago
- ☆32Updated 4 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆32Updated 2 years ago
- Predict prokaryotic host for phage metagenomic sequences☆52Updated 10 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆37Updated 3 years ago
- Binning Virus Genomes from Metagenomes☆65Updated 3 years ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆72Updated 3 weeks ago
- ☆27Updated last year
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆70Updated 3 weeks ago
- Unified Human Gut Virome Catalog☆32Updated 11 months ago
- Assessing and Improving the quality of metagenomic assemblies☆29Updated 3 years ago
- ☆35Updated 3 weeks ago
- Prophage Activity Estimator☆26Updated last year
- ARG normalization by mapping to the ARO ontology.☆58Updated this week
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆67Updated 3 months ago
- ☆37Updated last year
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆36Updated last year