KennthShang / CHERRY
Host prediction for phages
☆23Updated 3 months ago
Alternatives and similar repositories for CHERRY:
Users that are interested in CHERRY are comparing it to the libraries listed below
- PhaTYP: Predicting lifestyle for bacteriophages using BERT☆13Updated 3 months ago
- Predict prokaryotic host for phage metagenomic sequences☆52Updated 5 months ago
- Local version of the virus identification and analysis web server (tool set)☆42Updated last week
- HOTSPOT is a hierarchical host prediction tool for plasmid contigs using Transformer.☆10Updated 10 months ago
- ☆28Updated this week
- ☆31Updated last year
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆29Updated last year
- Downstream processing of VAMB binning for Viral Elucidation☆48Updated 7 months ago
- AMBER: Assessment of Metagenome BinnERs☆30Updated last month
- VirHostMatcher: matching hosts of viruses based on oligonucleotide frequency (ONF) comparison☆30Updated 6 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆32Updated 3 years ago
- Assessing and Improving the quality of metagenomic assemblies☆28Updated 3 years ago
- Snakemake workflow to detect and classify viruses in metagenome assemblies.☆18Updated last year
- Unified Human Gut Virome Catalog☆27Updated 7 months ago
- Detection of phage RBPs based on protein domains and machine learning☆22Updated 2 weeks ago
- Strain Resolution ON Graphs☆47Updated last year
- Binning Virus Genomes from Metagenomes☆60Updated 2 years ago
- Accurate identification of bacteriophages from metagenomic data using Transformer☆20Updated 3 months ago
- Phage-Host Interaction Search Tool☆27Updated 7 months ago
- ☆26Updated 10 months ago
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆62Updated 4 months ago
- VirBot: a protein-based RNA virus detector for metagenomic data☆29Updated 6 months ago
- Linking MAGs with 16S rRNA marker genes☆24Updated 2 weeks ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆53Updated last week
- ☆45Updated 11 months ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 6 months ago
- Improvement of metagenome-assembled genomes☆51Updated 4 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆38Updated 4 months ago
- Prophage Activity Estimator☆26Updated 8 months ago
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆23Updated last year