Host prediction for phages
☆28Nov 6, 2024Updated last year
Alternatives and similar repositories for CHERRY
Users that are interested in CHERRY are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GCN classifier for phage taxanomy classification☆32Nov 6, 2024Updated last year
- PhaTYP: Predicting lifestyle for bacteriophages using BERT☆19Nov 6, 2024Updated last year
- Phage virion protein classifier☆14Nov 6, 2024Updated last year
- Graph convolutional neural network for host prediction☆18Jul 13, 2025Updated last year
- viral Host UnveiLing Kit (vHULK)☆15May 15, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Virus Identification☆28May 26, 2025Updated last year
- ☆15Oct 14, 2023Updated 2 years ago
- Phage-Host Interaction Search Tool☆33Jul 8, 2024Updated 2 years ago
- Accurate identification of bacteriophages from metagenomic data using Transformer☆22Nov 6, 2024Updated last year
- This is the repository for DeepHost, a phage host prediction tool.☆23Dec 12, 2024Updated last year
- Local version of the virus identification and analysis web server (tool set)☆117May 13, 2026Updated 3 months ago
- Altered version of PathoFact to work more conveniently with SLURM and large input files☆14Nov 7, 2024Updated last year
- Identifying misassemblies via deep learning☆11May 1, 2024Updated 2 years ago
- Recovery of eukaryotic genomes using contrastive learning. A specialized metagenomic binning tool designed for recovering high-quality eu…☆22Jul 17, 2026Updated 3 weeks ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆35Jun 26, 2025Updated last year
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆83Apr 16, 2025Updated last year
- VirBot: a protein-based RNA virus detector for metagenomic data☆34Jul 29, 2024Updated 2 years ago
- Predict prokaryotic hosts for phage (meta) genomic sequences☆11Apr 4, 2022Updated 4 years ago
- a novel encoding method for viral identification in metagenomics☆15Sep 20, 2023Updated 2 years ago
- Improvement of metagenome-assembled genomes☆57Mar 17, 2020Updated 6 years ago
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆84Updated this week
- Multi-Teacher Distillation for Protein embedding☆12May 31, 2024Updated 2 years ago
- ☆12Mar 29, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Model for taxonomy classification☆16May 28, 2021Updated 5 years ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆234Jul 29, 2026Updated 2 weeks ago
- geNomad: Identification of mobile genetic elements☆328Mar 29, 2026Updated 4 months ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆335Updated this week
- HOTSPOT is a hierarchical host prediction tool for plasmid contigs using Transformer.☆10Apr 22, 2024Updated 2 years ago
- Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.☆24Jun 3, 2025Updated last year
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆25Mar 19, 2023Updated 3 years ago
- Detection of phage RBPs based on protein domains and machine learning☆34Feb 5, 2025Updated last year
- Viral protein family functional prediction using protein language models☆23Jan 6, 2026Updated 7 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆44Apr 4, 2023Updated 3 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆55Jul 3, 2024Updated 2 years ago
- Step-wise assembly of the neonatal virome modulated by breast feeding.☆11Aug 20, 2021Updated 4 years ago
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆19Feb 5, 2022Updated 4 years ago
- Pipeline for major biological analyses.☆35Mar 30, 2022Updated 4 years ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆62Jul 31, 2026Updated last week
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆23Aug 14, 2025Updated 11 months ago