Alternatives and similar repositories for CHERRY

Users that are interested in CHERRY are comparing it to the libraries listed below

• soedinglab / WIsH
  Predict prokaryotic host for phage metagenomic sequences
  ☆52Updated last year
• DrKaiyangZheng / VITAP
  The viral taxonomic assignment pipeline
  ☆36Updated last month
• liu-congcong / MetaDecoder
  An algorithm for clustering metagenomic sequences.
  ☆39Updated 7 months ago
• KennthShang / PhaMer
  Accurate identification of bacteriophages from metagenomic data using Transformer
  ☆22Updated last year
• apcamargo / ictv-mmseqs2-protein-database
  ☆31Updated last month
• michaelkyu / PlasX
  PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture
  ☆39Updated 3 years ago
• gbouras13 / plassembler
  Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates
  ☆81Updated 2 months ago
• ablab / viralVerify
  viralVerify: viral contig verification tool
  ☆72Updated 4 years ago
• ziyewang / MetaBinner
  ☆60Updated last year
• HIT-ImmunologyLab / DBSCAN-SWA
  ☆33Updated last year
• XiaofangJ / PhaseFinder
  A pipeline to computationally identify invertible DNA regions and quantify their orientations.
  ☆31Updated last year
• GreyGuoweiChen / VirBot
  VirBot: a protein-based RNA virus detector for metagenomic data
  ☆34Updated last year
• RasmussenLab / phamb
  Downstream processing of VAMB binning for Viral Elucidation
  ☆52Updated last year
• HubertTang / PLASMe
  ☆30Updated last year
• ziyewang / COMEBin
  ☆62Updated last year
• Orin-beep / HOTSPOT
  HOTSPOT is a hierarchical host prediction tool for plasmid contigs using Transformer.
  ☆10Updated last year
• RyanCook94 / inphared
  Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.
  ☆75Updated 7 months ago
• snayfach / MAGpurify
  Improvement of metagenome-assembled genomes
  ☆54Updated 5 years ago
• AnantharamanLab / vRhyme
  Binning Virus Genomes from Metagenomes
  ☆67Updated 3 years ago
• metaGmetapop / metapop
  A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations
  ☆43Updated 2 years ago
• linxingchen / cobra
  A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…
  ☆80Updated 2 months ago
• KennthShang / PhaTYP
  PhaTYP: Predicting lifestyle for bacteriophages using BERT
  ☆15Updated last year
• metagentools / MetaCoAG
  🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs
  ☆67Updated last year
• KIT-IBG-5 / mdmcleaner
  MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs
  ☆23Updated 2 years ago
• zhenchengfang / PPR-Meta
  A tool for identifying phages and plasmids from metagenomic fragments using deep learning
  ☆45Updated 4 years ago
• MattiaPandolfoVR / MetaPhage
  ☆38Updated last year
• cultivarium / MicrobeMod
  A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing
  ☆50Updated 2 months ago
• adamhockenberry / bacphlip
  A python library for predicting phage lifestyle based on genome sequence
  ☆37Updated 2 years ago
• wwood / galah
  More scalable dereplication for metagenome assembled genomes
  ☆73Updated 3 weeks ago
• endixk / ezaai
  EzAAI - High Throughput Prokaryotic AAI Calculator
  ☆44Updated 4 months ago