shoichisakaguchi / NeoRdRpLinks
☆22Updated last year
Alternatives and similar repositories for NeoRdRp
Users that are interested in NeoRdRp are comparing it to the libraries listed below
Sorting:
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆84Updated 3 months ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆98Updated 4 months ago
- Bioinformatics tool for Locus Visualisation☆113Updated 2 months ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆73Updated last year
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆49Updated 2 months ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆73Updated last month
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆96Updated 2 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 4 years ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆124Updated last year
- A toolbox for comparative genomics.☆104Updated 4 years ago
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆70Updated 3 months ago
- Perl script for simulating PCR reactions. Extract sequences from a query based on primer sequences.☆47Updated 4 months ago
- Supporting code for uncultivated gut virus manuscript☆72Updated 2 years ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆135Updated 2 months ago
- Prediction of prophages from bacterial genomes☆79Updated last month
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆69Updated 4 years ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆73Updated last month
- Reorients assembled microbial sequences☆124Updated 4 months ago
- DDBJ Fast Annotation and Submission Tool☆81Updated 3 months ago
- Binning Virus Genomes from Metagenomes☆66Updated 3 years ago
- ☆73Updated 2 weeks ago
- Reference-quality genome reconstruction from complex metagenomes (or bacterial isolates) using only Nanopore long reads or both long and …☆32Updated last year
- ☆55Updated last year
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆75Updated 7 months ago
- ☆25Updated 6 years ago
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆18Updated 5 years ago
- A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…☆94Updated 2 weeks ago
- GTDB taxonomy taxdump files with trackable TaxIds☆56Updated 3 months ago
- Effector prediction pipeline based on protein properties.☆15Updated 3 weeks ago
- Horizontal gene transfer (HGT) identification pipeline☆62Updated 2 years ago