DrKaiyangZheng / VITAPLinks
The viral taxonomic assignment pipeline
☆41Updated last week
Alternatives and similar repositories for VITAP
Users that are interested in VITAP are comparing it to the libraries listed below
Sorting:
- ☆64Updated last year
- Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.☆23Updated 6 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆52Updated last year
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆40Updated 3 years ago
- ☆61Updated last year
- ☆32Updated 2 months ago
- ☆32Updated last year
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆82Updated 2 weeks ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆82Updated 3 months ago
- Unified Human Gut Virome Catalog☆39Updated last month
- ☆33Updated 2 years ago
- Binning Virus Genomes from Metagenomes☆68Updated 3 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆45Updated 4 months ago
- ☆35Updated 6 months ago
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆28Updated 8 months ago
- Prophage Activity Estimator☆29Updated last year
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆15Updated 4 years ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆52Updated 3 weeks ago
- An algorithm for clustering metagenomic sequences.☆40Updated 2 weeks ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆95Updated 7 months ago
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆23Updated 2 years ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆51Updated last year
- ☆22Updated 3 years ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- ☆54Updated 5 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆35Updated 2 years ago
- A workflow and scripts for large-scale antiSMASH analyses☆46Updated 8 months ago
- ☆31Updated 10 months ago
- Taxonomic classification of viruses at Order and Family level☆21Updated 2 years ago
- Predict prokaryotic host for phage metagenomic sequences☆52Updated last year