The viral taxonomic assignment pipeline
☆45Apr 16, 2026Updated 4 months ago
Alternatives and similar repositories for VITAP
Users that are interested in VITAP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆13Mar 14, 2024Updated 2 years ago
- Virus Identification☆28May 26, 2025Updated last year
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆85Sep 8, 2025Updated 11 months ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆111Jul 7, 2026Updated last month
- A tool to assemble high-quality phages from metagenomes.☆23May 22, 2026Updated 2 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Viral protein family functional prediction using protein language models☆23Jan 6, 2026Updated 7 months ago
- PhaTYP: Predicting lifestyle for bacteriophages using BERT☆19Nov 6, 2024Updated last year
- Tool to submit viral sequences to Genbank.☆16May 14, 2026Updated 3 months ago
- Systematic search of all known anti-phage systems.☆183May 5, 2026Updated 3 months ago
- ☆35Oct 6, 2025Updated 10 months ago
- Supporting code for uncultivated gut virus manuscript☆81Jul 17, 2023Updated 3 years ago
- Local version of the virus identification and analysis web server (tool set)☆117May 13, 2026Updated 3 months ago
- Scripts and utilities for pangenomic/phylogenomic analysis of prokaryotic genomes. Scripts for the analysis of genomic features such as C…☆12May 28, 2021Updated 5 years ago
- Phage Annotation using Protein Structures☆171Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆92Dec 27, 2024Updated last year
- Discover and annotate the virome☆64Jun 10, 2026Updated 2 months ago
- Unified Human Gut Virome Catalog☆47May 29, 2026Updated 2 months ago
- FUGAsseM: Function predictor of Uncharacterized Gene products by Assessing high-dimensional community data in Microbiomes☆21Dec 26, 2025Updated 7 months ago
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆26Jan 8, 2026Updated 7 months ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆336Updated this week
- RNA virus analysis toolkit☆22Aug 11, 2026Updated last week
- A listing of software, tools and databases useful for virome analysis☆90Updated this week
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆44Apr 4, 2023Updated 3 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree☆38May 25, 2026Updated 2 months ago
- viralVerify: viral contig verification tool☆76Feb 19, 2026Updated 5 months ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆153Aug 10, 2026Updated last week
- Accurate identification of bacteriophages from metagenomic data using Transformer☆22Nov 6, 2024Updated last year
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆76Updated this week
- ☆27Jun 20, 2023Updated 3 years ago
- A community effort to create a shared resource for HMM-based RdRp discovery☆17Jul 14, 2026Updated last month
- MetaSNV, a metagenomic SNV calling pipeline.☆21Mar 25, 2022Updated 4 years ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆22Dec 16, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆35Jun 26, 2025Updated last year
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆18Nov 29, 2023Updated 2 years ago
- VIRIDIC (Virus Intergenomic Distance Calculator) computes pairwise intergenomic distances/similarities amongst viral genomes.☆20Oct 19, 2023Updated 2 years ago
- Bioinformatic Application for Quantification and LAbeling of VirAl taxonomy☆18Jul 13, 2026Updated last month
- VirBot: a protein-based RNA virus detector for metagenomic data☆34Jul 29, 2024Updated 2 years ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆234Jul 29, 2026Updated 2 weeks ago
- aweMAGs: a fully automated workflow for eukariotic MAGs☆23Jun 6, 2023Updated 3 years ago