DrKaiyangZheng / VITAPLinks
The viral taxonomic assignment pipeline
☆33Updated last month
Alternatives and similar repositories for VITAP
Users that are interested in VITAP are comparing it to the libraries listed below
Sorting:
- ☆62Updated last year
- Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.☆22Updated 5 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆51Updated last year
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆39Updated 3 years ago
- ☆31Updated last month
- ☆59Updated last year
- ☆33Updated last year
- Virus Identification☆23Updated 5 months ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆81Updated last month
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 3 months ago
- Binning Virus Genomes from Metagenomes☆66Updated 3 years ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆80Updated 2 months ago
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆15Updated 3 years ago
- ☆31Updated 9 months ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆29Updated last year
- ☆35Updated 4 months ago
- Prophage Activity Estimator☆28Updated last year
- ☆54Updated 4 months ago
- Build a map of genes present across a set of microbial genomes☆18Updated last month
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆23Updated 2 years ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆50Updated 2 months ago
- VirBot: a protein-based RNA virus detector for metagenomic data☆34Updated last year
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆67Updated last year
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆92Updated 5 months ago
- Predict prokaryotic host for phage metagenomic sequences☆52Updated last year
- Unified Human Gut Virome Catalog☆37Updated last week
- An algorithm for clustering metagenomic sequences.☆39Updated 7 months ago
- ☆30Updated last year
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆24Updated 2 weeks ago