crazyinter / RNN-VirSeekerLinks
This is a deep learning method for identification of viral contigs with short length from metagenomic data.
☆10Updated 3 years ago
Alternatives and similar repositories for RNN-VirSeeker
Users that are interested in RNN-VirSeeker are comparing it to the libraries listed below
Sorting:
- Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-…☆29Updated last week
- Discover and annotate the virome☆54Updated last month
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆45Updated last month
- ☆16Updated last month
- MAG Circularization Method☆32Updated 3 weeks ago
- Unified Human Gut Virome Catalog☆38Updated 2 weeks ago
- Pipeline for metagenomic community analysis using DNA isolated from virus-like particles☆13Updated 5 years ago
- Phasing for metagenomics using PacBio long reads☆16Updated 4 years ago
- viralComplete: BLAST-based viral completeness verification☆24Updated 4 years ago
- Strain Resolution ON Graphs☆49Updated 2 years ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated last year
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆37Updated last year
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆22Updated this week
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆66Updated 2 months ago
- ☆24Updated 10 months ago
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆44Updated 3 months ago
- Phage-Host Interaction Search Tool☆29Updated last year
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.☆24Updated last week
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆23Updated 2 years ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆20Updated 3 years ago
- GTDB => NCBI☆15Updated last year
- ☆33Updated last year
- Fast viral consensus genome reconstruction☆25Updated 4 months ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆39Updated last year
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 7 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆69Updated this week
- A set of programs for the taxonomic analysis of genetic sequences☆14Updated 2 years ago
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆25Updated 2 years ago