EGTortuero / vigaLinks
De novo VIral Genome Annotator
☆23Updated 11 months ago
Alternatives and similar repositories for viga
Users that are interested in viga are comparing it to the libraries listed below
Sorting:
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- ☆11Updated last year
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 3 years ago
- CAMITAX: Taxon labels for microbial genomes☆30Updated last year
- software to identify primers that can distinguish genomes☆21Updated 6 months ago
- Dadaist2 🟨 Highway to R☆13Updated 5 months ago
- Influenza genome analysis Nextflow workflow☆23Updated last week
- Neptune: Genomic Signature Discovery☆20Updated 8 months ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆15Updated 5 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Updated 3 years ago
- Bioinformatics pipeline for nanopore sequencing data☆11Updated 6 years ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆23Updated 2 years ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated 5 months ago
- transposable element typing pipeline☆18Updated last year
- Download assembly files from NCBI☆12Updated 2 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Detect contigs of complete circular genomes☆23Updated 6 years ago
- Read contamination removal☆25Updated last year
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 4 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆46Updated 2 years ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆39Updated 11 months ago
- screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics☆11Updated 4 years ago
- Lowest Common Ancestor from a SAM/BAM/CRAM alignment file☆9Updated 11 months ago
- MetagenOmic read Re-Assigner and abundance quantifier☆19Updated 6 months ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆22Updated last year
- A pipeline for whole genome assembly☆16Updated 3 years ago