EGTortuero / viga
De novo VIral Genome Annotator
☆19Updated last week
Related projects: ⓘ
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated last year
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆21Updated 6 months ago
- A pipeline for whole genome assembly☆16Updated 2 years ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆14Updated 2 years ago
- ☆21Updated last year
- ☆19Updated 9 months ago
- MetaSNV, a metagenomic SNV calling pipeline.☆19Updated 2 years ago
- transposable element typing pipeline☆15Updated 6 months ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated 2 years ago
- Lowest Common Ancestor from a SAM/BAM/CRAM alignment file☆9Updated 3 weeks ago
- C++ tools for NCBI taxonomy tasks☆11Updated 2 years ago
- screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics☆11Updated 3 years ago
- Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler☆15Updated 2 months ago
- Plot genome alignment figure using progressiveMauve & genoPlotR☆21Updated 2 years ago
- Scripts used in the publication Tyler P. Barnum, Israel A. Figueroa, Charlotte I. Carlström, Lauren N. Lucas, Anna L. Engelbrektson, and …☆10Updated 5 years ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆9Updated 6 months ago
- Hybrid Assembler for Plasmids☆10Updated 2 years ago
- Bioinformatics tool for Locus Visualisation☆15Updated this week
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆22Updated 2 months ago
- Raspir, the rare species identifier☆11Updated 11 months ago
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆20Updated 7 years ago
- Bioinformatics pipeline for nanopore sequencing data☆10Updated 5 years ago
- Dadaist2 🟨 Highway to R☆13Updated 7 months ago
- Tools for extracting individual genomes from metagenomes☆17Updated 9 months ago
- A Shotgun Metagenome Annotation Pipeline☆23Updated 7 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆21Updated 5 months ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Updated 5 years ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆23Updated last month
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆19Updated 8 years ago