EGTortuero / vigaLinks
De novo VIral Genome Annotator
☆23Updated last year
Alternatives and similar repositories for viga
Users that are interested in viga are comparing it to the libraries listed below
Sorting:
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- ☆11Updated last year
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- transposable element typing pipeline☆19Updated last year
- Read contamination removal☆25Updated last year
- CAMITAX: Taxon labels for microbial genomes☆30Updated last year
- Neptune: Genomic Signature Discovery☆20Updated 10 months ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated 2 years ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated last month
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 4 years ago
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12Updated last year
- Influenza genome analysis Nextflow workflow☆23Updated 3 weeks ago
- software to identify primers that can distinguish genomes☆20Updated 8 months ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Updated 6 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆22Updated 2 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Bioinformatics pipeline for nanopore sequencing data☆11Updated 6 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆35Updated 3 months ago
- ☆20Updated last year
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Updated 3 years ago
- Remove human reads from a sequencing run☆40Updated 2 months ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆25Updated 6 years ago
- detect temperate phage (active prophage) in assembled bacterial genome sequences☆14Updated 3 years ago
- Tool for exploring sequence alignment algorithms☆13Updated last year
- ☆45Updated 2 months ago
- C++ tools for NCBI taxonomy tasks☆11Updated 3 months ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated 10 months ago
- ☆32Updated 2 years ago