rdrp-summit / awesome-rna-virus-toolsLinks
An community curated awesome list of tools, software, databases and other resources for working/analysing RNA Viruses
☆21Updated 4 months ago
Alternatives and similar repositories for awesome-rna-virus-tools
Users that are interested in awesome-rna-virus-tools are comparing it to the libraries listed below
Sorting:
- Discover and annotate the virome☆56Updated 2 months ago
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆48Updated last week
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- Metaphor: a general-purpose workflow for assembly and binning of metagenomes☆40Updated last month
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆45Updated 4 months ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆25Updated 6 years ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆40Updated 3 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Remove human reads from a sequencing run☆46Updated 2 weeks ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆32Updated last year
- Strain-level haplotyping for metagenomes with short or long-reads.☆63Updated 8 months ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆31Updated 5 months ago
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆21Updated 7 months ago
- reference-based long read assemblies of bacterial genomes☆51Updated 4 years ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated last month
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆39Updated 9 months ago
- Bifrost graph gene caller.☆96Updated 3 months ago
- Gene-flank analysis tool☆34Updated last year
- Recombination-free trees☆64Updated 4 months ago
- strain-level analysis tools☆39Updated last year
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆26Updated last month
- frame-shift correction for long-read (meta)genomics☆33Updated 2 years ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated 4 months ago
- Bacterial GWAS analysis☆46Updated 2 months ago
- ☆18Updated last year
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆25Updated 3 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- ☆24Updated 11 months ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆22Updated 5 months ago