liaoherui / VirStrain
An RNA virus strain-level identification tool for short reads.
☆21Updated 11 months ago
Alternatives and similar repositories for VirStrain
Users that are interested in VirStrain are comparing it to the libraries listed below
Sorting:
- Influenza genome analysis Nextflow workflow☆22Updated last month
- Trimming tool for Oxford Nanopore sequence data☆21Updated 3 years ago
- Find Unique genomic Regions☆29Updated last month
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆28Updated 3 months ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- Main development repository for SpreadGL☆18Updated 7 months ago
- OPAL: Open-community Profiling Assessment tooL☆28Updated 3 months ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- Strain Prediction and Analysis with Representative SEquence☆18Updated 5 months ago
- MAG Circularization Method☆33Updated 2 years ago
- Scripts for creating a Kraken database from the Comprehensive Antibiotic Resistance Database☆10Updated 8 years ago
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆24Updated last year
- strain-level analysis tools☆36Updated 6 months ago
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆21Updated last week
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆22Updated last year
- Resolving Species Level Classification Using Emu☆12Updated 10 months ago
- Phasing for metagenomics using PacBio long reads☆17Updated 3 years ago
- This is a deep learning method for identification of viral contigs with short length from metagenomic data.☆10Updated 3 years ago
- ☆26Updated last year
- Snakemake pipeline for simulating shotgun metagenomic samples☆23Updated this week
- Strain Resolution ON Graphs☆47Updated last year
- SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.☆20Updated last month
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆23Updated 2 years ago
- viralComplete: BLAST-based viral completeness verification☆25Updated 3 years ago
- Intra-species bacterial contamination detection☆25Updated 3 months ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆19Updated 2 years ago
- Reference-free Binning of Metagenomics Long Reads using Coverage and Composition☆20Updated 8 months ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆29Updated 3 months ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago