An RNA virus strain-level identification tool for short reads.
☆23Jan 29, 2026Updated last month
Alternatives and similar repositories for VirStrain
Users that are interested in VirStrain are comparing it to the libraries listed below
Sorting:
- GDmicro - Use GCN and Deep adaptation network to classify host disease status based on human gut microbiome data.☆11Mar 22, 2024Updated last year
- A viral haplotype reconstruction tool for long reads.☆13Mar 2, 2024Updated 2 years ago
- High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers☆43Apr 8, 2024Updated last year
- Full-length de novo viral haplotype reconstruction from noisy long reads☆21Nov 6, 2023Updated 2 years ago
- Screening Historical Events of Recombination in a Phylogeny via Ancestral Sequences☆10Sep 3, 2025Updated 6 months ago
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Feb 27, 2026Updated last week
- ☆20Jun 10, 2024Updated last year
- Influenza genome analysis Nextflow workflow☆24Jan 26, 2026Updated last month
- ☆30Sep 21, 2023Updated 2 years ago
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 5 years ago
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆12Mar 2, 2023Updated 3 years ago
- Integrating influenza antigenic dynamics with molecular evolution☆12May 28, 2015Updated 10 years ago
- HOTSPOT is a hierarchical host prediction tool for plasmid contigs using Transformer.☆10Apr 22, 2024Updated last year
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆62Updated this week
- 🧬 Viral genome reference alignment☆12Jan 26, 2021Updated 5 years ago
- viralComplete: BLAST-based viral completeness verification☆24Oct 4, 2021Updated 4 years ago
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- Nanopore Real-Time Analysis Tool☆17Sep 4, 2024Updated last year
- ☆24Dec 2, 2022Updated 3 years ago
- Prediction of B-cell epitopes from amino acid sequences using deep neural networks.☆16Aug 3, 2021Updated 4 years ago
- Next Index to Query Kmer Intersection☆17Feb 1, 2023Updated 3 years ago
- ☆14Oct 14, 2020Updated 5 years ago
- VirBot: a protein-based RNA virus detector for metagenomic data☆34Jul 29, 2024Updated last year
- viralVerify: viral contig verification tool☆74Feb 19, 2026Updated 2 weeks ago
- Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…☆18Apr 4, 2023Updated 2 years ago
- Pipeline for processing FASTQ data from an Illumina MiSeq to genotype human RNA viruses like HIV and hepatitis C☆19Updated this week
- a versatile toolkit for processing and analyzing diverse types of sequence data☆22Feb 18, 2026Updated 2 weeks ago
- Rapid analysis and visualization of coronavirus genome variation☆48Feb 28, 2026Updated last week
- VIGOR4☆21Aug 15, 2025Updated 6 months ago
- Systematic ProtEin AnnotatoR☆19Sep 20, 2025Updated 5 months ago
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆22May 3, 2025Updated 10 months ago
- A streamlined workflow and GUI for real-time species identification and pathogen characterization via nanopore sequencing data. Engineere…☆20Oct 4, 2024Updated last year
- map Illumina metagenomes to genomes!☆38Jan 22, 2026Updated last month
- fastx-utils using klib☆20Sep 1, 2020Updated 5 years ago
- Virus Identification☆25May 26, 2025Updated 9 months ago
- TAXnomic Profile Aggregation and STAndardisation☆42Nov 18, 2025Updated 3 months ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- Introduction to Nanopore Sequencing - Prac material and presentations from The Omics Australia Tutorials Sydney (TOAST) workshop 19th - 2…☆10Jan 12, 2019Updated 7 years ago
- Alignment-free method to identify and analyse discriminant genomic subsequences within pathogen sequences☆10Feb 26, 2023Updated 3 years ago