liaoherui / VirStrainLinks
An RNA virus strain-level identification tool for short reads.
☆21Updated last year
Alternatives and similar repositories for VirStrain
Users that are interested in VirStrain are comparing it to the libraries listed below
Sorting:
- Influenza genome analysis Nextflow workflow☆23Updated 3 months ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- OPAL: Open-community Profiling Assessment tooL☆29Updated 6 months ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- Highly sensitive pathogen detection☆12Updated 4 years ago
- De novo VIral Genome Annotator☆23Updated 10 months ago
- ☆10Updated 2 months ago
- ☆13Updated last year
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Updated 2 years ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- Utility program for extracting sequences from a fasta/fastq file☆36Updated 6 months ago
- ☆11Updated last year
- Nanopore plasmid pipeline (FAST5 basecalling, assembly, plasmid identification and antimicrobial resistance genes identification).☆12Updated 4 years ago
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆11Updated 3 years ago
- Toolkit for establishing, updating, and validating GTDB species clusters☆21Updated last month
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Updated last year
- Scripts for creating a Kraken database from the Comprehensive Antibiotic Resistance Database☆10Updated 8 years ago
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆25Updated last year
- Main development repository for SpreadGL☆18Updated 9 months ago
- Strain Prediction and Analysis with Representative SEquence☆20Updated 7 months ago
- Nanopore Real-Time Analysis Tool☆15Updated 10 months ago
- Bioinformatics pipeline for nanopore sequencing data☆11Updated 6 years ago
- Trimming tool for Oxford Nanopore sequence data☆21Updated 4 years ago
- Find Unique genomic Regions☆30Updated 3 months ago
- Lowest Common Ancestor from a SAM/BAM/CRAM alignment file☆9Updated 10 months ago
- Systematic ProtEin AnnotatoR☆19Updated 9 months ago
- ☆19Updated 8 years ago
- ☆23Updated 2 years ago
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Updated 4 years ago