Alternatives and similar repositories for VirStrain

Users that are interested in VirStrain are comparing it to the libraries listed below

• CAMI-challenge / OPAL
  OPAL: Open-community Profiling Assessment tooL
  ☆29Updated 8 months ago
• SushiLab / mVIRs
  ☆12Updated last year
• AnWiercze / NanopoReaTA
  Nanopore Real-Time Analysis Tool
  ☆15Updated last year
• EGTortuero / viga
  De novo VIral Genome Annotator
  ☆23Updated last year
• CFIA-NCFAD / nf-flu
  Influenza genome analysis Nextflow workflow
  ☆23Updated 3 weeks ago
• kevsilva / StrainFLAIR
  Strain-level abundances estimation in metagenomic samples using variation graphs
  ☆24Updated 2 years ago
• metasnv-tool / metaSNV
  MetaSNV, a metagenomic SNV calling pipeline.
  ☆20Updated 3 years ago
• balabanmetin / uDance
  ☆41Updated last year
• EvolBioInf / fur
  Find Unique genomic Regions
  ☆30Updated 3 weeks ago
• biocore / wol
  Reference Phylogeny for Bacterial and Archaeal Genomes
  ☆24Updated 2 months ago
• Ecogenomics / gtdb-species-clusters
  Toolkit for establishing, updating, and validating GTDB species clusters
  ☆20Updated 3 months ago
• rega-cev / virulign
  VIRULIGN: fast codon-correct alignment and annotation of viral genomes
  ☆35Updated 4 years ago
• GuyBaele / SpreadGL
  Main development repository for SpreadGL
  ☆19Updated last year
• linsalrob / genbank_to
  Convert genbank files to a swath of other formats
  ☆20Updated 2 years ago
• zjshi / gt-pro
  ☆23Updated 2 years ago
• sanger-pathogens / seroba
  k-mer based Pipeline to identify the Serotype from Illumina NGS reads
  ☆25Updated 2 years ago
• pollardlab / MIDAS
  Metagenomic Intra-Species Diversity Analysis (MIDAS)
  ☆39Updated last year
• borenstein-lab / fishtaco
  FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…
  ☆24Updated 4 years ago
• xmuyulab / Snipe
  Highly sensitive pathogen detection
  ☆11Updated 5 years ago
• ProwlerForNanopore / ProwlerTrimmer
  Trimming tool for Oxford Nanopore sequence data
  ☆22Updated 4 years ago
• FischbachLab / ninjaMap
  Compute strain abundance in a defined microbial community
  ☆10Updated 2 years ago
• leoisl / bacterial_assembly_pipeline
  ☆11Updated last year
• KevinKuchinski / ProbeTools
  Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa
  ☆25Updated 2 years ago
• CAMI-challenge / CAMITAX
  CAMITAX: Taxon labels for microbial genomes
  ☆30Updated last year
• SwingOlive / kASA
  kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding
  ☆23Updated 2 years ago
• NBISweden / nbis-meta
  A snakemake workflow for metagenomic projects
  ☆14Updated 2 years ago
• m-crown / SPEAR
  Systematic ProtEin AnnotatoR
  ☆19Updated 2 weeks ago
• 01life / ViromeFlowX
  ☆10Updated 4 months ago
• hzi-bifo / Haploflow
  ☆30Updated 2 years ago
• quwubin / paired-kmers
  finding conserved regions in highly diverse genomes
  ☆14Updated 4 months ago