liaoherui / VirStrainLinks
An RNA virus strain-level identification tool for short reads.
☆22Updated last year
Alternatives and similar repositories for VirStrain
Users that are interested in VirStrain are comparing it to the libraries listed below
Sorting:
- De novo VIral Genome Annotator☆23Updated last year
- Find Unique genomic Regions☆32Updated 3 weeks ago
- OPAL: Open-community Profiling Assessment tooL☆29Updated 10 months ago
- Highly sensitive pathogen detection☆12Updated 5 years ago
- Influenza genome analysis Nextflow workflow☆24Updated 2 months ago
- Reference Phylogeny for Bacterial and Archaeal Genomes☆24Updated 3 months ago
- Nanopore Real-Time Analysis Tool☆15Updated last year
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- Toolkit for establishing, updating, and validating GTDB species clusters☆20Updated 3 weeks ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆39Updated last year
- Convert genbank files to a swath of other formats☆22Updated 2 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated 2 years ago
- Trimming tool for Oxford Nanopore sequence data☆22Updated 4 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Updated 4 years ago
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆25Updated 2 years ago
- finding conserved regions in highly diverse genomes☆15Updated 5 months ago
- Main development repository for SpreadGL☆19Updated last year
- Rapidly subtype microbial genomes using single-nucleotide variant (SNV) subtyping schemes☆28Updated 11 months ago
- ☆11Updated last year
- Viral genome coverage evaluation for metagenomic diagnostics☆27Updated 3 months ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆20Updated 3 years ago
- NCBI taxonomic identifier (taxid) changelog, including taxids deletion, new adding, merge, reuse, and rank/name changes.☆29Updated 6 months ago
- Utility program for extracting sequences from a fasta/fastq file☆35Updated 10 months ago
- ☆26Updated 2 years ago
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆33Updated this week
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆31Updated last year
- ☆13Updated last year