A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metagenomes
☆106Jul 14, 2026Updated 2 months ago
Alternatives and similar repositories for veba
Users that are interested in veba are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆189Mar 17, 2026Updated 6 months ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆280Mar 20, 2025Updated last year
- alignment-free coverage calculation for metagenomic binning >100 times faster☆57May 8, 2026Updated 4 months ago
- Query sequence database by HMMs arranged in predefined synteny structure☆21Jun 23, 2026Updated 3 months ago
- MAGScoT - a MAG scoring and refinement tool☆49Apr 8, 2026Updated 5 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆79Sep 7, 2026Updated 2 weeks ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆264May 13, 2026Updated 4 months ago
- SemiBin: metagenomics binning with self-supervised deep learning☆175Updated this week
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆77Aug 13, 2026Updated last month
- geNomad: Identification of mobile genetic elements☆334Mar 29, 2026Updated 5 months ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆119Sep 9, 2026Updated 2 weeks ago
- Recovery of eukaryotic genomes using contrastive learning. A specialized metagenomic binning tool designed for recovering high-quality eu…☆26Updated this week
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆64Sep 1, 2026Updated 3 weeks ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆101Mar 12, 2026Updated 6 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆27Jun 20, 2023Updated 3 years ago
- Discover and annotate the virome☆64Jun 10, 2026Updated 3 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆55Jul 3, 2024Updated 2 years ago
- A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.☆55Updated this week
- scripts for microbiome analysis☆12Jul 25, 2024Updated 2 years ago
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆20Sep 1, 2026Updated 3 weeks ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆323Sep 15, 2026Updated last week
- Read alignment statistics for metagenomics☆407Updated this week
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆342Updated this week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆235Updated this week
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆195Sep 8, 2026Updated 2 weeks ago
- Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-…☆42Sep 16, 2026Updated last week
- DAS Tool☆177May 2, 2024Updated 2 years ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆153Sep 8, 2026Updated 2 weeks ago
- A comprehensive prokaryotic genome annotation pipeline☆93Sep 4, 2026Updated 2 weeks ago
- More scalable dereplication for metagenome assembled genomes☆88Sep 9, 2026Updated 2 weeks ago
- Discovery of conserved gene clusters in multiple genomes☆135Aug 21, 2026Updated last month
- Variational autoencoder for metagenomic binning☆332Apr 27, 2026Updated 4 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Virus Identification By iteRative ANnoTation☆204Apr 15, 2024Updated 2 years ago
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆95Aug 13, 2024Updated 2 years ago
- Systematic search of all known anti-phage systems.☆186Sep 1, 2026Updated 3 weeks ago
- A metatranscriptomic pipeline optimized for the study of microeukaryotes.☆18Dec 30, 2025Updated 8 months ago
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆46Jun 1, 2026Updated 3 months ago
- Woltka: a versatile meta'omic data classifier☆81Sep 8, 2025Updated last year
- Metagenomic Binning Algorithm☆55Updated this week