A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metagenomes
☆99Feb 8, 2026Updated last month
Alternatives and similar repositories for veba
Users that are interested in veba are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆179Mar 17, 2026Updated last week
- Assessing the quality of metagenome-derived genome bins using machine learning☆252Mar 20, 2025Updated last year
- alignment-free coverage calculation for metagenomic binning >100 times faster☆50Mar 13, 2025Updated last year
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆241Oct 12, 2025Updated 5 months ago
- Discover and annotate the virome☆59Feb 11, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- geNomad: Identification of mobile genetic elements☆296Mar 18, 2026Updated last week
- MAGScoT - a MAG scoring and refinement tool☆43Oct 10, 2024Updated last year
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆298Feb 3, 2026Updated last month
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆71Dec 1, 2025Updated 3 months ago
- SemiBin: metagenomics binning with self-supervised deep learning☆156Feb 19, 2026Updated last month
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆72Mar 3, 2026Updated 3 weeks ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆104Jan 27, 2026Updated last month
- ☆25Jun 20, 2023Updated 2 years ago
- A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.☆45Feb 5, 2026Updated last month
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Downstream processing of VAMB binning for Viral Elucidation☆54Jul 3, 2024Updated last year
- scripts for microbiome analysis☆12Jul 25, 2024Updated last year
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆20Dec 12, 2024Updated last year
- Read alignment statistics for metagenomics☆392Mar 16, 2026Updated last week
- Discovery of conserved gene clusters in multiple genomes☆127Jan 16, 2026Updated 2 months ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆323Mar 18, 2026Updated last week
- Precise host read removal☆119Sep 4, 2025Updated 6 months ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Mar 3, 2026Updated 3 weeks ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆227Jan 20, 2026Updated 2 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆81Mar 19, 2026Updated last week
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆183Updated this week
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆86Mar 12, 2026Updated 2 weeks ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆147Mar 4, 2026Updated 3 weeks ago
- DAS Tool☆169May 2, 2024Updated last year
- Variational autoencoder for metagenomic binning☆319Feb 23, 2026Updated last month
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆41Feb 26, 2026Updated last month
- Virus Identification By iteRative ANnoTation☆190Apr 15, 2024Updated last year
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆89Aug 13, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A metatranscriptomic pipeline optimized for the study of microeukaryotes.☆17Dec 30, 2025Updated 2 months ago
- Metagenomic Binning Algorithm☆51Jan 16, 2026Updated 2 months ago
- Woltka: a versatile meta'omic data classifier☆77Sep 8, 2025Updated 6 months ago
- Systematic search of all known anti-phage systems.☆149Jan 22, 2026Updated 2 months ago
- Tool for unsupervised contig binning from viral metagenomes☆17Oct 22, 2021Updated 4 years ago
- Rapid comparison and dereplication of genomes☆329Nov 10, 2025Updated 4 months ago
- Automatic eukaryotic taxonomic classification☆29May 9, 2025Updated 10 months ago