jolespin / vebaView external linksLinks
A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metagenomes
☆99Updated this week
Alternatives and similar repositories for veba
Users that are interested in veba are comparing it to the libraries listed below
Sorting:
- Assessing the quality of metagenome-derived genome bins using machine learning☆248Mar 20, 2025Updated 10 months ago
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆176Jan 7, 2026Updated last month
- alignment-free coverage calculation for metagenomic binning >100 times faster☆48Mar 13, 2025Updated 11 months ago
- Discover and annotate the virome☆58Updated this week
- geNomad: Identification of mobile genetic elements☆286Nov 10, 2025Updated 3 months ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆71Dec 1, 2025Updated 2 months ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆235Oct 12, 2025Updated 4 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆290Feb 3, 2026Updated last week
- MAGScoT - a MAG scoring and refinement tool☆42Oct 10, 2024Updated last year
- A hybrid assembly and MAG recovery pipeline (and more!)☆104Jan 27, 2026Updated 2 weeks ago
- SemiBin: metagenomics binning with self-supervised deep learning☆154Jan 23, 2026Updated 3 weeks ago
- Downstream processing of VAMB binning for Viral Elucidation☆54Jul 3, 2024Updated last year
- ☆26Jun 20, 2023Updated 2 years ago
- ☆82Nov 27, 2025Updated 2 months ago
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆20Dec 12, 2024Updated last year
- A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.☆44Feb 5, 2026Updated last week
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆319Feb 3, 2026Updated last week
- Read alignment statistics for metagenomics☆387Jan 16, 2026Updated 3 weeks ago
- Precise host read removal☆115Sep 4, 2025Updated 5 months ago
- Discovery of conserved gene clusters in multiple genomes☆124Jan 16, 2026Updated 3 weeks ago
- scripts for microbiome analysis☆11Jul 25, 2024Updated last year
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆179Jan 28, 2026Updated 2 weeks ago
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆70Feb 5, 2026Updated last week
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆224Jan 20, 2026Updated 3 weeks ago
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆89Aug 13, 2024Updated last year
- DAS Tool☆169May 2, 2024Updated last year
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆146Dec 17, 2025Updated last month
- Binning Virus Genomes from Metagenomes☆70Jul 13, 2022Updated 3 years ago
- Variational autoencoder for metagenomic binning☆315Feb 2, 2026Updated last week
- Virus Identification By iteRative ANnoTation☆184Apr 15, 2024Updated last year
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆40Dec 10, 2025Updated 2 months ago
- Rapid comparison and dereplication of genomes☆326Nov 10, 2025Updated 3 months ago
- An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…☆254Jul 27, 2024Updated last year
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆82Nov 13, 2025Updated 3 months ago
- Tool for unsupervised contig binning from viral metagenomes☆17Oct 22, 2021Updated 4 years ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆606Updated this week
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆71Jan 5, 2026Updated last month
- Systematic search of all known anti-phage systems.☆144Jan 22, 2026Updated 3 weeks ago
- CAMISIM: Simulating metagenomes and microbial communities☆221Feb 5, 2026Updated last week