jolespin / vebaLinks
A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metagenomes
☆97Updated last month
Alternatives and similar repositories for veba
Users that are interested in veba are comparing it to the libraries listed below
Sorting:
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆49Updated last week
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆85Updated 4 months ago
- Follow up to Grace Blackwell's 661k dataset, for 2023☆118Updated 3 weeks ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆77Updated 8 months ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆75Updated 2 months ago
- ARG normalization by mapping to the ARO ontology.☆58Updated last month
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆76Updated last week
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆74Updated last year
- ☆75Updated this week
- Binning Virus Genomes from Metagenomes☆65Updated 3 years ago
- Prediction of prophages from bacterial genomes☆79Updated 3 months ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆60Updated 5 months ago
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆71Updated 4 months ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆52Updated last month
- A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.☆49Updated 3 years ago
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆71Updated 5 months ago
- Bioinformatics tool to find integrons in bacterial genomes☆81Updated 4 months ago
- Tool to estimate genome quality of microbial eukaryotes☆37Updated last month
- 🦠🧬🧑💻📇 Microbial genomes-to-report pipeline☆62Updated this week
- A pipeline for running AMRfinderPlus and collating results into functional classes☆80Updated last year
- post processing of bacterial pangenome gene presence/absence matrices☆61Updated 6 months ago
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆87Updated last year
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆96Updated 2 years ago
- viralVerify: viral contig verification tool☆72Updated 4 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆62Updated last week
- ☆48Updated 6 months ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆140Updated last month
- A toolbox for comparative genomics.☆103Updated 4 years ago
- Supporting code for uncultivated gut virus manuscript☆74Updated 2 years ago
- HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes☆61Updated 3 years ago