A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metagenomes
☆107Jul 14, 2026Updated last month
Alternatives and similar repositories for veba
Users that are interested in veba are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆190Mar 17, 2026Updated 5 months ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆276Mar 20, 2025Updated last year
- alignment-free coverage calculation for metagenomic binning >100 times faster☆56May 8, 2026Updated 3 months ago
- Query sequence database by HMMs arranged in predefined synteny structure☆21Jun 23, 2026Updated 2 months ago
- MAGScoT - a MAG scoring and refinement tool☆49Apr 8, 2026Updated 4 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆79Updated this week
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆263May 13, 2026Updated 3 months ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆76Aug 13, 2026Updated 3 weeks ago
- SemiBin: metagenomics binning with self-supervised deep learning☆174Aug 3, 2026Updated last month
- geNomad: Identification of mobile genetic elements☆329Mar 29, 2026Updated 5 months ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆118Updated this week
- Recovery of eukaryotic genomes using contrastive learning. A specialized metagenomic binning tool designed for recovering high-quality eu…☆23Aug 20, 2026Updated 2 weeks ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆62Updated this week
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆91Mar 12, 2026Updated 5 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆27Jun 20, 2023Updated 3 years ago
- Discover and annotate the virome☆64Jun 10, 2026Updated 2 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆55Jul 3, 2024Updated 2 years ago
- A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.☆55Jul 10, 2026Updated last month
- scripts for microbiome analysis☆12Jul 25, 2024Updated 2 years ago
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆20Updated this week
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆318Feb 3, 2026Updated 7 months ago
- Read alignment statistics for metagenomics☆405Jul 10, 2026Updated last month
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆339Aug 16, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆235Jul 29, 2026Updated last month
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆195Updated this week
- Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-…☆42Apr 7, 2026Updated 4 months ago
- DAS Tool☆177May 2, 2024Updated 2 years ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆153Updated this week
- A comprehensive prokaryotic genome annotation pipeline☆93Updated this week
- More scalable dereplication for metagenome assembled genomes☆87Updated this week
- Discovery of conserved gene clusters in multiple genomes☆135Aug 21, 2026Updated 2 weeks ago
- Virus Identification By iteRative ANnoTation☆203Apr 15, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Variational autoencoder for metagenomic binning☆331Apr 27, 2026Updated 4 months ago
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆95Aug 13, 2024Updated 2 years ago
- Systematic search of all known anti-phage systems.☆184Updated this week
- A metatranscriptomic pipeline optimized for the study of microeukaryotes.☆18Dec 30, 2025Updated 8 months ago
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆46Jun 1, 2026Updated 3 months ago
- Woltka: a versatile meta'omic data classifier☆81Sep 8, 2025Updated 11 months ago
- Metagenomic Binning Algorithm☆55Updated this week