Model for taxonomy classification
☆16May 28, 2021Updated 5 years ago
Alternatives and similar repositories for CHEER
Users that are interested in CHEER are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Multi-Teacher Distillation for Protein embedding☆12May 31, 2024Updated 2 years ago
- ☆18Oct 7, 2024Updated last year
- VirBot: a protein-based RNA virus detector for metagenomic data☆34Jul 29, 2024Updated last year
- Phage virion protein classifier☆14Nov 6, 2024Updated last year
- GCN classifier for phage taxanomy classification☆32Nov 6, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Accurate identification of bacteriophages from metagenomic data using Transformer☆22Nov 6, 2024Updated last year
- Virus Identification☆27May 26, 2025Updated last year
- Host prediction for phages☆28Nov 6, 2024Updated last year
- team lander github repo☆10Aug 7, 2021Updated 4 years ago
- a toolkit for evaluation of the lenght of k-mer in a given genome dataset for alignment-free phylogenimic analysis.☆15Nov 21, 2024Updated last year
- Graph convolutional neural network for host prediction☆18Jul 13, 2025Updated last year
- PhaTYP: Predicting lifestyle for bacteriophages using BERT☆19Nov 6, 2024Updated last year
- ☆35Jun 26, 2025Updated last year
- Alignment-free method to identify and analyse discriminant genomic subsequences within pathogen sequences☆10Feb 26, 2023Updated 3 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Integrated toolkit for analysis and evaluation of annotated genomes☆25Aug 1, 2025Updated 11 months ago
- Training scripts for BERTax☆12Jun 12, 2024Updated 2 years ago
- R vignettes/pkgdown for elementary statistics for a summer course☆14May 7, 2026Updated 2 months ago
- Rarefaction scripts☆17Jan 30, 2026Updated 5 months ago
- ☆33Jul 14, 2021Updated 5 years ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆21Nov 15, 2022Updated 3 years ago
- ☆36Apr 15, 2024Updated 2 years ago
- ☆10Oct 30, 2018Updated 7 years ago
- Predict the boundary of transcript start and end from RNA-seq reads alignment☆11Feb 13, 2017Updated 9 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Scripts for calculating features and regression of prokaryote OGT☆25Feb 13, 2024Updated 2 years ago
- Exploring the "dusk matter" of the RNA virosphere☆40Mar 25, 2022Updated 4 years ago
- ☆12Apr 1, 2025Updated last year
- collection of bioinformatic scripts☆33May 3, 2024Updated 2 years ago
- Associate pathways + gene ontologies with significant genes.☆10Jun 5, 2023Updated 3 years ago
- Prediction of virus-host association using protein language models and multiple instance learning☆23Jun 13, 2024Updated 2 years ago
- A fork for the old hhsuite-2.0.16☆13Nov 27, 2020Updated 5 years ago
- GDmicro - Use GCN and Deep adaptation network to classify host disease status based on human gut microbiome data.☆11Mar 22, 2024Updated 2 years ago
- DeepMicrobes: taxonomic classification for metagenomics with deep learning☆107Sep 17, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A Qiime plugin for MICOM.☆10Updated this week
- MONI: A Pangenomic Index for Finding MEMs☆37Mar 25, 2025Updated last year
- CATH: high-throughput protein structure/function annotations☆12Dec 17, 2019Updated 6 years ago
- HOTSPOT is a hierarchical host prediction tool for plasmid contigs using Transformer.☆10Apr 22, 2024Updated 2 years ago
- Load Google's pre-trained Word2Vec model using gensim APIs☆13Jun 9, 2017Updated 9 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆30Jun 13, 2023Updated 3 years ago
- Code, scripts, some logs and general misc. from to the RNA viruses in MetaTranscriptome discovery project.☆12Jan 5, 2023Updated 3 years ago