Model for taxonomy classification
☆16May 28, 2021Updated 4 years ago
Alternatives and similar repositories for CHEER
Users that are interested in CHEER are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Multi-Teacher Distillation for Protein embedding☆12May 31, 2024Updated last year
- ☆17Oct 7, 2024Updated last year
- VirBot: a protein-based RNA virus detector for metagenomic data☆34Jul 29, 2024Updated last year
- GCN classifier for phage taxanomy classification☆31Nov 6, 2024Updated last year
- Accurate identification of bacteriophages from metagenomic data using Transformer☆22Nov 6, 2024Updated last year
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Phage virion protein classifier☆14Nov 6, 2024Updated last year
- PhaTYP: Predicting lifestyle for bacteriophages using BERT☆16Nov 6, 2024Updated last year
- Virus Identification☆25May 26, 2025Updated 10 months ago
- Host prediction for phages☆26Nov 6, 2024Updated last year
- a toolkit for evaluation of the lenght of k-mer in a given genome dataset for alignment-free phylogenimic analysis.☆15Nov 21, 2024Updated last year
- Graph convolutional neural network for host prediction☆18Jul 13, 2025Updated 8 months ago
- ☆35Jun 26, 2025Updated 9 months ago
- Integrated toolkit for analysis and evaluation of annotated genomes☆25Aug 1, 2025Updated 7 months ago
- Training scripts for BERTax☆12Jun 12, 2024Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- An community curated awesome list of tools, software, databases and other resources for working/analysing RNA Viruses☆22Aug 15, 2025Updated 7 months ago
- Predict the boundary of transcript start and end from RNA-seq reads alignment☆11Feb 13, 2017Updated 9 years ago
- ☆33Jul 14, 2021Updated 4 years ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆20Nov 15, 2022Updated 3 years ago
- Rarefaction scripts☆17Jan 30, 2026Updated last month
- team lander github repo☆10Aug 7, 2021Updated 4 years ago
- ☆10Oct 30, 2018Updated 7 years ago
- Scripts for calculating features and regression of prokaryote OGT☆25Feb 13, 2024Updated 2 years ago
- Alignment-free method to identify and analyse discriminant genomic subsequences within pathogen sequences☆10Feb 26, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Exploring the "dusk matter" of the RNA virosphere☆37Mar 25, 2022Updated 4 years ago
- R vignettes/pkgdown for elementary statistics for a summer course☆14Jan 9, 2025Updated last year
- Prediction of virus-host association using protein language models and multiple instance learning☆22Jun 13, 2024Updated last year
- collection of bioinformatic scripts☆32May 3, 2024Updated last year
- MONI: A Pangenomic Index for Finding MEMs☆37Mar 25, 2025Updated last year
- a C complier based on lex/flex,yacc/bison,华中科技大学编译原理实验☆10Mar 17, 2020Updated 6 years ago
- A fork for the old hhsuite-2.0.16☆13Nov 27, 2020Updated 5 years ago
- GDmicro - Use GCN and Deep adaptation network to classify host disease status based on human gut microbiome data.☆11Mar 22, 2024Updated 2 years ago
- CATH: high-throughput protein structure/function annotations☆12Dec 17, 2019Updated 6 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- HOTSPOT is a hierarchical host prediction tool for plasmid contigs using Transformer.☆10Apr 22, 2024Updated last year
- DeepMicrobes: taxonomic classification for metagenomics with deep learning☆104Sep 17, 2022Updated 3 years ago
- Stochastic trace estimation using JAX☆17Aug 20, 2025Updated 7 months ago
- Code, scripts, some logs and general misc. from to the RNA viruses in MetaTranscriptome discovery project.☆12Jan 5, 2023Updated 3 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆30Jun 13, 2023Updated 2 years ago
- Learning and Aligning Large Protein Families with support of protein language models.☆31Updated this week
- Project template for STAT-4830☆19Feb 16, 2026Updated last month