KennthShang / PhaMerLinks
Accurate identification of bacteriophages from metagenomic data using Transformer
☆22Updated last year
Alternatives and similar repositories for PhaMer
Users that are interested in PhaMer are comparing it to the libraries listed below
Sorting:
- ☆33Updated 2 years ago
- Virus Identification☆25Updated 6 months ago
- Unified Human Gut Virome Catalog☆39Updated last month
- Downstream processing of VAMB binning for Viral Elucidation☆52Updated last year
- ☆32Updated 2 months ago
- Discover and annotate the virome☆55Updated 2 months ago
- A python library for predicting phage lifestyle based on genome sequence☆37Updated 2 years ago
- ☆16Updated this week
- Phage-Host Interaction Search Tool☆29Updated last year
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆43Updated 2 years ago
- Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.☆23Updated 6 months ago
- The viral taxonomic assignment pipeline☆41Updated 3 weeks ago
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆67Updated last year
- Strain Resolution ON Graphs☆49Updated 2 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆40Updated 3 years ago
- More scalable dereplication for metagenome assembled genomes☆75Updated this week
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆36Updated last year
- ☆14Updated 4 years ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆95Updated 6 months ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆39Updated 2 months ago
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆23Updated 2 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 4 months ago
- ☆22Updated 3 years ago
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆19Updated 2 years ago
- Prophage Activity Estimator☆29Updated last year
- a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree☆34Updated 3 years ago
- A workflow and scripts for large-scale antiSMASH analyses☆46Updated 8 months ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆22Updated last year
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆24Updated last year
- ☆38Updated 2 years ago