Accurate identification of bacteriophages from metagenomic data using Transformer
☆22Nov 6, 2024Updated last year
Alternatives and similar repositories for PhaMer
Users that are interested in PhaMer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Virus Identification☆26May 26, 2025Updated last year
- Phage virion protein classifier☆14Nov 6, 2024Updated last year
- VirBot: a protein-based RNA virus detector for metagenomic data☆34Jul 29, 2024Updated last year
- Host prediction for phages☆27Nov 6, 2024Updated last year
- PhaTYP: Predicting lifestyle for bacteriophages using BERT☆19Nov 6, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- GCN classifier for phage taxanomy classification☆32Nov 6, 2024Updated last year
- Graph convolutional neural network for host prediction☆18Jul 13, 2025Updated 11 months ago
- Local version of the virus identification and analysis web server (tool set)☆111May 13, 2026Updated last month
- The viral taxonomic assignment pipeline☆44Apr 16, 2026Updated 2 months ago
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆19Nov 29, 2023Updated 2 years ago
- A python library for predicting phage lifestyle based on genome sequence☆41Aug 9, 2023Updated 2 years ago
- ☆34Dec 20, 2023Updated 2 years ago
- Binning Virus Genomes from Metagenomes☆75Jul 13, 2022Updated 3 years ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆23Dec 16, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- MARVEL: Metagenomic Analyses and Retrieval of Viral ELements☆51Apr 19, 2024Updated 2 years ago
- A tool for identifying phages and plasmids from metagenomic fragments using deep learning☆44Apr 13, 2021Updated 5 years ago
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆83Apr 16, 2025Updated last year
- Assort phage protein sequences into phamilies using MMseqs2☆12Dec 16, 2024Updated last year
- viralVerify: viral contig verification tool☆75Feb 19, 2026Updated 4 months ago
- Multi-Teacher Distillation for Protein embedding☆12May 31, 2024Updated 2 years ago
- Model for taxonomy classification☆16May 28, 2021Updated 5 years ago
- VIRIDIC (Virus Intergenomic Distance Calculator) computes pairwise intergenomic distances/similarities amongst viral genomes.☆20Oct 19, 2023Updated 2 years ago
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆84Dec 4, 2025Updated 6 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆46Jun 1, 2026Updated 3 weeks ago
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆61Jun 4, 2025Updated last year
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆41Apr 20, 2026Updated 2 months ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆333Jun 3, 2026Updated 3 weeks ago
- Phage Annotation using Protein Structures☆167Updated this week
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆22May 3, 2025Updated last year
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆41Feb 9, 2022Updated 4 years ago
- a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree☆37May 25, 2026Updated last month
- CATH: high-throughput protein structure/function annotations☆12Dec 17, 2019Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- fast phage annotation program☆214Jun 17, 2026Updated last week
- ☆19May 13, 2021Updated 5 years ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆65Apr 22, 2026Updated 2 months ago
- Discover and annotate the virome☆63Jun 10, 2026Updated 2 weeks ago
- An open database of vertebrate-virus interactions☆43Jun 9, 2026Updated 3 weeks ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆268Mar 20, 2025Updated last year
- ☆13Aug 15, 2025Updated 10 months ago