KennthShang / PhaMer
Accurate identification of bacteriophages from metagenomic data using Transformer
☆21Updated 6 months ago
Alternatives and similar repositories for PhaMer
Users that are interested in PhaMer are comparing it to the libraries listed below
Sorting:
- Unified Human Gut Virome Catalog☆31Updated 9 months ago
- ☆32Updated last year
- A python library for predicting phage lifestyle based on genome sequence☆37Updated last year
- ☆20Updated 3 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆34Updated 3 years ago
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆35Updated last year
- A simple program to classify the lifestyle of phages.☆17Updated last year
- Downstream processing of VAMB binning for Viral Elucidation☆49Updated 10 months ago
- Strain Resolution ON Graphs☆47Updated last year
- A workflow and scripts for large-scale antiSMASH analyses☆40Updated last month
- The viral taxonomic assignment pipeline☆23Updated 2 months ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 3 weeks ago
- Phage-Host Interaction Search Tool☆27Updated 10 months ago
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆24Updated 7 months ago
- ☆37Updated last year
- PLSDB pipeline to collect bacterial plasmids from NCBI☆38Updated 6 months ago
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆24Updated 2 years ago
- Predict prokaryotic host for phage metagenomic sequences☆52Updated 8 months ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆21Updated last year
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆23Updated last year
- HOTSPOT is a hierarchical host prediction tool for plasmid contigs using Transformer.☆10Updated last year
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆37Updated 4 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated 2 years ago
- Host prediction for phages☆25Updated 6 months ago
- Improvement of metagenome-assembled genomes☆52Updated 5 years ago
- Assessing and Improving the quality of metagenomic assemblies☆28Updated 3 years ago
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆28Updated last month
- Discover and annotate the virome☆42Updated last month
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆45Updated 3 weeks ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆30Updated 2 weeks ago