KennthShang / PhaMer
Accurate identification of bacteriophages from metagenomic data using Transformer
☆20Updated 2 weeks ago
Related projects ⓘ
Alternatives and complementary repositories for PhaMer
- ☆30Updated 11 months ago
- A python library for predicting phage lifestyle based on genome sequence☆35Updated last year
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆19Updated 10 months ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆35Updated 2 years ago
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆22Updated last month
- Downstream processing of VAMB binning for Viral Elucidation☆46Updated 4 months ago
- Phage-Host Interaction Search Tool☆27Updated 4 months ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆18Updated 2 years ago
- ☆23Updated 9 months ago
- ☆37Updated 11 months ago
- Strain Resolution ON Graphs☆47Updated last year
- A simple program to classify the lifestyle of phages.☆16Updated last year
- Host prediction for phages☆22Updated 2 weeks ago
- Prophage Activity Estimator☆26Updated 5 months ago
- ☆25Updated 7 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆49Updated this week
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆18Updated 8 months ago
- KEGG Module Evaluation Tool☆26Updated last year
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆29Updated 2 years ago
- ☆23Updated last year
- This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"☆19Updated 3 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- MAG Circularization Method☆33Updated 2 years ago
- Assessing and Improving the quality of metagenomic assemblies☆27Updated 2 years ago
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆24Updated last month
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆29Updated last year
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆18Updated 11 months ago
- Unified Human Gut Virome Catalog☆27Updated 4 months ago
- Discover and annotate the virome☆31Updated last month
- ☆18Updated 2 years ago