Scripts, HMMs and search databases for identifying and classifying viral RdRp sequences
☆16Aug 6, 2026Updated 2 months ago
Alternatives and similar repositories for palm_annot
Users that are interested in palm_annot are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tool to submit viral sequences to Genbank.☆16May 14, 2026Updated 4 months ago
- ☆35Oct 6, 2025Updated last year
- Database of virus RdRP barcode sequences☆16Jul 5, 2024Updated 2 years ago
- ☆39May 20, 2026Updated 4 months ago
- ☆28Aug 6, 2026Updated 2 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Virus Identification☆29May 26, 2025Updated last year
- An community curated awesome list of tools, software, databases and other resources for working/analysing RNA Viruses☆24Aug 31, 2026Updated last month
- ☆25Feb 2, 2021Updated 5 years ago
- A community effort to create a shared resource for HMM-based RdRp discovery☆18Jul 14, 2026Updated 2 months ago
- Pipeline to apply encoded Kmer analysis to protein sequences☆17Jun 22, 2026Updated 3 months ago
- Module and script to remove contamination in assembled genomes before submission to ncbi☆14Jul 28, 2025Updated last year
- RNA virus analysis toolkit☆25Sep 23, 2026Updated 2 weeks ago
- ☆16May 26, 2022Updated 4 years ago
- This is a deep learning method for identification of viral contigs with short length from metagenomic data.☆10Dec 20, 2021Updated 4 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- easy_sbatch - Batch submitting Slurm jobs with script templates☆16Dec 28, 2021Updated 4 years ago
- LucaProt: A novel deep learning framework that incorporates protein amino acid sequence and structural information to predict protein fun…☆235Jan 29, 2026Updated 8 months ago
- Exploring the "dusk matter" of the RNA virosphere☆40Mar 25, 2022Updated 4 years ago
- Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method☆18Dec 29, 2022Updated 3 years ago
- ☆13Sep 4, 2026Updated last month
- Viroid-like circRNA discovery and analysis suite☆20Nov 11, 2023Updated 2 years ago
- Small pipeline to cluster viral genomes based on their k-mer content. WiP☆21Sep 23, 2026Updated 2 weeks ago
- A machine learning approach to alignment filtering☆17Jun 18, 2026Updated 3 months ago
- circularMT creates pictures of the genomic arrangement of mitochondrial genomes☆18Jul 15, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Prediction of virus-host association using protein language models and multiple instance learning☆23Jun 13, 2024Updated 2 years ago
- Learning and Aligning Large Protein Families with support of protein language models.☆33Updated this week
- Code and data used in Mollentze et al. (2021) "Identifying and prioritizing potential human-infecting viruses from their genome sequences…☆20Apr 15, 2026Updated 5 months ago
- Virus reassortment inference software. Infers both recent and ancestral reassortment and uses flexible molecular clock constraints.☆23Sep 29, 2025Updated last year
- Better Alignments with Translated HMMER☆27Updated this week
- Codon Usage Analysis and Prediction of Gene Expressivity☆22Jan 2, 2019Updated 7 years ago
- [NeurIPS 2024] "NovoBench: Benchmarking Deep Learning-based \emph{De Novo} Sequencing Methods in Proteomics"☆15Nov 23, 2024Updated last year
- Primalscheme3. Generation of highly multiplex primerschemes☆28Sep 24, 2026Updated 2 weeks ago
- frame-shift correction for long-read (meta)genomics☆33Dec 11, 2023Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Identification of viral RdRPs in single-cell RNA sequencing data☆15Mar 12, 2026Updated 6 months ago
- ☆13Jun 15, 2024Updated 2 years ago
- Fast and flexible ORF finder☆84Jan 17, 2022Updated 4 years ago
- ☆34Updated this week
- ORFFinder in Python☆14Aug 24, 2024Updated 2 years ago
- A package for designing activity-informed nucleic acid diagnostics for viruses.☆34Feb 14, 2023Updated 3 years ago
- MGY441 Bioinformatics: Virus Discovery Project☆25Dec 22, 2025Updated 9 months ago