rcedgar / palm_annotLinks
Scripts, HMMs and search databases for identifying and classifying viral RdRp sequences
☆10Updated last month
Alternatives and similar repositories for palm_annot
Users that are interested in palm_annot are comparing it to the libraries listed below
Sorting:
- Virus Identification☆23Updated 3 months ago
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆22Updated 6 months ago
- ☆32Updated 6 months ago
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆24Updated 2 years ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆46Updated 8 months ago
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆18Updated last week
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆28Updated 4 months ago
- Pipeline for metagenomic community analysis using DNA isolated from virus-like particles☆13Updated 5 years ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆73Updated 2 months ago
- Unified Human Gut Virome Catalog☆34Updated last year
- ☆17Updated 3 years ago
- Integrative virome pipeline☆13Updated 9 months ago
- A tool for domain based annotation with databases from the Conserved Domains Database☆30Updated 11 months ago
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆18Updated last week
- ☆11Updated 5 months ago
- Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases☆24Updated 2 years ago
- Pipeline for major biological analyses.☆35Updated 3 years ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆56Updated 5 months ago
- This is a deep learning method for identification of viral contigs with short length from metagenomic data.☆10Updated 3 years ago
- Detection of phage RBPs based on protein domains and machine learning☆24Updated 6 months ago
- A workflow and scripts for large-scale antiSMASH analyses☆41Updated 4 months ago
- Exploring the "dusk matter" of the RNA virosphere☆35Updated 3 years ago
- a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree☆31Updated 2 years ago
- Repository for general metagenomics Nextflow pipeline☆23Updated last month
- Machine learning for accurate identification and classification of CRISPR-Cas systems☆22Updated 8 months ago
- ☆30Updated 8 months ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆38Updated 4 months ago
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆37Updated last year
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆51Updated 6 months ago
- VirBot: a protein-based RNA virus detector for metagenomic data☆33Updated last year