Scripts, HMMs and search databases for identifying and classifying viral RdRp sequences
☆14May 17, 2026Updated 3 weeks ago
Alternatives and similar repositories for palm_annot
Users that are interested in palm_annot are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆34Oct 6, 2025Updated 8 months ago
- ☆35May 20, 2026Updated 3 weeks ago
- Database of virus RdRP barcode sequences☆16Jul 5, 2024Updated last year
- ☆27May 17, 2026Updated 3 weeks ago
- Virus Identification☆26May 26, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆25Feb 2, 2021Updated 5 years ago
- Module and script to remove contamination in assembled genomes before submission to ncbi☆14Jul 28, 2025Updated 10 months ago
- Pipeline to apply encoded Kmer analysis to protein sequences☆16May 15, 2026Updated 3 weeks ago
- ☆17Jun 9, 2025Updated last year
- ☆17May 26, 2022Updated 4 years ago
- This is a deep learning method for identification of viral contigs with short length from metagenomic data.☆10Dec 20, 2021Updated 4 years ago
- Better Alignments with Translated HMMER☆26Jun 4, 2026Updated last week
- easy_sbatch - Batch submitting Slurm jobs with script templates☆16Dec 28, 2021Updated 4 years ago
- LucaProt: A novel deep learning framework that incorporates protein amino acid sequence and structural information to predict protein fun…☆226Jan 29, 2026Updated 4 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Exploring the "dusk matter" of the RNA virosphere☆39Mar 25, 2022Updated 4 years ago
- ☆23Apr 13, 2026Updated last month
- Small pipeline to cluster viral genomes based on their k-mer content. WiP☆19May 28, 2026Updated 2 weeks ago
- Shell bootloader for data science.☆10Updated this week
- Python package to plot a phylogenetic tree on an existing matplotlib axis.☆29Jul 21, 2025Updated 10 months ago
- A tool that helps finding decoy molecules for a given target, provided a set of active molecules.☆17Feb 24, 2022Updated 4 years ago
- Learning and Aligning Large Protein Families with support of protein language models.☆32Jun 4, 2026Updated last week
- Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method☆17Dec 29, 2022Updated 3 years ago
- ☆13May 28, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Virus reassortment inference software. Infers both recent and ancestral reassortment and uses flexible molecular clock constraints.☆23Sep 29, 2025Updated 8 months ago
- Prediction of virus-host association using protein language models and multiple instance learning☆22Jun 13, 2024Updated last year
- [NeurIPS 2024] "NovoBench: Benchmarking Deep Learning-based \emph{De Novo} Sequencing Methods in Proteomics"☆14Nov 23, 2024Updated last year
- Codon Usage Analysis and Prediction of Gene Expressivity☆23Jan 2, 2019Updated 7 years ago
- Logan Unitigs and Contigs☆193May 20, 2026Updated 3 weeks ago
- frame-shift correction for long-read (meta)genomics☆33Dec 11, 2023Updated 2 years ago
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆40Apr 20, 2026Updated last month
- ☆13Jun 15, 2024Updated last year
- Identification of viral RdRPs in single-cell RNA sequencing data☆13Mar 12, 2026Updated 2 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆25Jan 8, 2026Updated 5 months ago
- Fast and flexible ORF finder☆82Jan 17, 2022Updated 4 years ago
- ORFFinder in Python☆14Aug 24, 2024Updated last year
- automatically generates your project's coverage badge using the shields.io service, and then updates your README☆12Jun 4, 2026Updated last week
- Taxonomic classification of viruses at Order and Family level☆21Mar 1, 2023Updated 3 years ago
- A package for designing activity-informed nucleic acid diagnostics for viruses.☆35Feb 14, 2023Updated 3 years ago
- Code, scripts, some logs and general misc. from to the RNA viruses in MetaTranscriptome discovery project.☆12Jan 5, 2023Updated 3 years ago