JustineCharon / RdRp-scanLinks
Exploring the "dusk matter" of the RNA virosphere
☆35Updated 3 years ago
Alternatives and similar repositories for RdRp-scan
Users that are interested in RdRp-scan are comparing it to the libraries listed below
Sorting:
- ☆20Updated last year
- VirBot: a protein-based RNA virus detector for metagenomic data☆30Updated 10 months ago
- Python tool to reduce size and redundancy of phylogenetic datasets☆42Updated 2 years ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆58Updated 2 months ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆48Updated 2 weeks ago
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆83Updated last month
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated last week
- CGView is a Java package for generating high-quality, zoomable maps of circular genomes.☆44Updated 11 months ago
- Binning Virus Genomes from Metagenomes☆65Updated 2 years ago
- ☆72Updated last month
- BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a f…☆34Updated 6 years ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆50Updated 4 months ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆71Updated last year
- Local version of the virus identification and analysis web server (tool set)☆61Updated this week
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆84Updated last month
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆67Updated 2 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆42Updated 8 months ago
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆62Updated 6 months ago
- GTDB taxonomy taxdump files with trackable TaxIds☆54Updated last month
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆95Updated 2 years ago
- ☆30Updated 5 months ago
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆21Updated 4 months ago
- A python library for predicting phage lifestyle based on genome sequence☆38Updated last year
- Prediction of prophages from bacterial genomes☆78Updated 2 weeks ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 2 months ago
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆67Updated last month
- Bioinformatics tool for Locus Visualisation☆106Updated last month
- PHANOTATE: a gene caller for phages.☆77Updated 6 months ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆69Updated this week