Exploring the "dusk matter" of the RNA virosphere
☆40Mar 25, 2022Updated 4 years ago
Alternatives and similar repositories for RdRp-scan
Users that are interested in RdRp-scan are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆24May 13, 2024Updated 2 years ago
- A community effort to create a shared resource for HMM-based RdRp discovery☆17Jul 14, 2026Updated last week
- FastViromeExplorer project. Forked from https://code.vt.edu/saima5/FastViromeExplorer☆15Jul 2, 2019Updated 7 years ago
- This is a deep learning method for identification of viral contigs with short length from metagenomic data.☆10Dec 20, 2021Updated 4 years ago
- R Data Exploration for Serratus☆16Mar 29, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆26Jan 8, 2026Updated 6 months ago
- VirBot: a protein-based RNA virus detector for metagenomic data☆34Jul 29, 2024Updated last year
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆21Nov 15, 2022Updated 3 years ago
- Pipeline for metagenomic community analysis using DNA isolated from virus-like particles☆13Mar 21, 2020Updated 6 years ago
- RNA dependent RNA Polymerase Palmprint Analysis☆13Aug 1, 2024Updated last year
- ☆35Jun 26, 2025Updated last year
- VirHostMatcher: matching hosts of viruses based on oligonucleotide frequency (ONF) comparison☆32Jul 28, 2018Updated 7 years ago
- Virus Identification☆27May 26, 2025Updated last year
- An community curated awesome list of tools, software, databases and other resources for working/analysing RNA Viruses☆24Aug 15, 2025Updated 11 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Code for de novo discovery of viral families in virome data☆16Jun 20, 2024Updated 2 years ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆39Apr 9, 2026Updated 3 months ago
- Code, scripts, some logs and general misc. from to the RNA viruses in MetaTranscriptome discovery project.☆12Jan 5, 2023Updated 3 years ago
- Database of virus RdRP barcode sequences☆16Jul 5, 2024Updated 2 years ago
- LucaProt: A novel deep learning framework that incorporates protein amino acid sequence and structural information to predict protein fun…☆227Jan 29, 2026Updated 5 months ago
- Scripts, HMMs and search databases for identifying and classifying viral RdRp sequences☆14May 17, 2026Updated 2 months ago
- Set of tools for viral metagenomics.☆17Jun 1, 2026Updated last month
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- DEPRECATED: Use Cenote-Taker 3 instead☆14Jan 19, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Ultra-deep search for novel viruses☆276Mar 29, 2023Updated 3 years ago
- Cenote-Taker2: Discover and Annotate Divergent Viral Contigs (Please use Cenote-Taker 3 instead)☆56Jan 19, 2024Updated 2 years ago
- ☆27May 17, 2026Updated 2 months ago
- Syntax highlighting for computational biology☆16Dec 19, 2017Updated 8 years ago
- R package for studying phylogenetically-informed movements (Dellicour et al. 2016, Bioinformatics; Dellicour et al. 2026, Bioinformatics)☆43Mar 24, 2026Updated 4 months ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆296Nov 28, 2024Updated last year
- An automated assembly pipeline for microbial genomes☆19Jun 9, 2026Updated last month
- CNN based classifier for detecting viral sequences among metagenomic contigs☆34Aug 24, 2020Updated 5 years ago
- A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data☆10Nov 27, 2024Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- 🦠🧬 Unraveling Viral Genomes from Metagenomes☆11Oct 3, 2025Updated 9 months ago
- Predict prokaryotic host for phage metagenomic sequences☆56Sep 17, 2024Updated last year
- A set of scripts for the assembly of chloroplast genomes out of whole-genome sequencing reads☆12May 2, 2019Updated 7 years ago
- Small pipeline to cluster viral genomes based on their k-mer content. WiP☆21Jul 3, 2026Updated 3 weeks ago
- Discover and annotate the virome☆64Jun 10, 2026Updated last month
- VirNet: A deep attention model for viral reads identification☆30Nov 16, 2021Updated 4 years ago
- Foreign Contamination Screening - GX source code☆27Jun 9, 2025Updated last year