JustineCharon / RdRp-scanLinks
Exploring the "dusk matter" of the RNA virosphere
☆35Updated 3 years ago
Alternatives and similar repositories for RdRp-scan
Users that are interested in RdRp-scan are comparing it to the libraries listed below
Sorting:
- Python tool to reduce size and redundancy of phylogenetic datasets☆45Updated 2 years ago
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆64Updated this week
- VirBot: a protein-based RNA virus detector for metagenomic data☆34Updated last year
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆50Updated 8 months ago
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆72Updated 5 months ago
- BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a f…☆36Updated 6 years ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆89Updated 4 months ago
- Binning Virus Genomes from Metagenomes☆65Updated 3 years ago
- Bioinformatics tool for Locus Visualisation☆124Updated 4 months ago
- ☆58Updated last year
- ☆61Updated last year
- PHANOTATE: a gene caller for phages.☆78Updated 10 months ago
- Amalgamated likelihood estimation (ALE) is a probabilistic approach to exhaustively explore all reconciled gene trees that can be amalgam…☆49Updated 4 months ago
- CLI tool to annotate genes with KOfam☆86Updated 2 years ago
- Pipeline for major biological analyses.☆35Updated 3 years ago
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆59Updated last year
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 2 years ago
- viralVerify: viral contig verification tool☆72Updated 4 years ago
- ☆31Updated 9 months ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆34Updated last year
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆64Updated last week
- Unified Human Gut Virome Catalog☆36Updated last month
- ☆76Updated last week
- Supporting code for uncultivated gut virus manuscript☆75Updated 2 years ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆49Updated last month
- A python library for predicting phage lifestyle based on genome sequence☆37Updated 2 years ago
- UFCG: Universal Fungal Core Genes☆34Updated 2 months ago
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆85Updated 5 months ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆76Updated last week
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 2 months ago