KennthShang / PhaGCNLinks
GCN classifier for phage taxanomy classification
☆31Updated last year
Alternatives and similar repositories for PhaGCN
Users that are interested in PhaGCN are comparing it to the libraries listed below
Sorting:
- Graph convolutional neural network for host prediction☆19Updated 5 months ago
- VirBot: a protein-based RNA virus detector for metagenomic data☆34Updated last year
- PhaTYP: Predicting lifestyle for bacteriophages using BERT☆15Updated last year
- ☆35Updated 5 months ago
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆70Updated 2 months ago
- The viral taxonomic assignment pipeline☆41Updated 3 weeks ago
- Viral protein family functional prediction using protein language models☆21Updated last week
- VirHostMatcher: matching hosts of viruses based on oligonucleotide frequency (ONF) comparison☆31Updated 7 years ago
- Supporting code for uncultivated gut virus manuscript☆77Updated 2 years ago
- Machine-learning-based general bacterial promoter prediction tool.☆51Updated 2 years ago
- Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.☆23Updated 6 months ago
- An algorithm for clustering metagenomic sequences.☆40Updated last week
- Host prediction for phages☆25Updated last year
- Predict prokaryotic host for phage metagenomic sequences☆52Updated last year
- ☆61Updated last year
- ☆33Updated 4 years ago
- ☆33Updated 2 years ago
- ☆18Updated 4 years ago
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆75Updated 8 months ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆67Updated 2 weeks ago
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆22Updated 10 months ago
- Exploring the "dusk matter" of the RNA virosphere☆35Updated 3 years ago
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 4 years ago
- Pipeline for major biological analyses.☆36Updated 3 years ago
- Virus Identification☆25Updated 6 months ago
- ☆32Updated 2 months ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆38Updated last year
- ☆64Updated last year
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆51Updated 11 months ago
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆60Updated last year