Identifying viruses from metagenomic data by deep learning
☆154May 5, 2026Updated 2 months ago
Alternatives and similar repositories for DeepVirFinder
Users that are interested in DeepVirFinder are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data☆139Apr 9, 2020Updated 6 years ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆296Nov 28, 2024Updated last year
- Virus Identification By iteRative ANnoTation☆199Apr 15, 2024Updated 2 years ago
- Binning Virus Genomes from Metagenomes☆75Jul 13, 2022Updated 4 years ago
- Source code of the VirSorter tool, also available as an App on CyVerse/iVirus (https://de.iplantcollaborative.org/de/)☆101Oct 3, 2020Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- VirHostMatcher: matching hosts of viruses based on oligonucleotide frequency (ONF) comparison☆32Jul 28, 2018Updated 7 years ago
- A tool for identifying phages and plasmids from metagenomic fragments using deep learning☆44Apr 13, 2021Updated 5 years ago
- Predict prokaryotic host for phage metagenomic sequences☆56Sep 17, 2024Updated last year
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆19Nov 29, 2023Updated 2 years ago
- Cenote-Taker2: Discover and Annotate Divergent Viral Contigs (Please use Cenote-Taker 3 instead)☆56Jan 19, 2024Updated 2 years ago
- VirHostMatcher-Net: A network-based computational tool for predicting virus-host interactions.☆19Mar 8, 2026Updated 4 months ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆21Nov 15, 2022Updated 3 years ago
- ☆33Jul 14, 2021Updated 5 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆55Jul 3, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Discover and annotate the virome☆64Jun 10, 2026Updated last month
- This is a deep learning method for identification of viral contigs with short length from metagenomic data.☆10Dec 20, 2021Updated 4 years ago
- MARVEL: Metagenomic Analyses and Retrieval of Viral ELements☆51Apr 19, 2024Updated 2 years ago
- a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree☆38May 25, 2026Updated 2 months ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆335Updated this week
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆83Apr 16, 2025Updated last year
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆18Aug 13, 2020Updated 5 years ago
- geNomad: Identification of mobile genetic elements☆325Mar 29, 2026Updated 3 months ago
- Virus Identification☆27May 26, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- CNN based classifier for detecting viral sequences among metagenomic contigs☆34Aug 24, 2020Updated 5 years ago
- ☆18Apr 6, 2022Updated 4 years ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆23Dec 16, 2024Updated last year
- Variational autoencoder for metagenomic binning☆330Apr 27, 2026Updated 2 months ago
- WtP: Phage identification via nextflow and docker or singularity☆107Jul 15, 2026Updated last week
- Mining CRISPRs in Environmental Datasets☆124Feb 10, 2023Updated 3 years ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆75Dec 28, 2019Updated 6 years ago
- a novel encoding method for viral identification in metagenomics☆15Sep 20, 2023Updated 2 years ago
- ☆20May 13, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆233Jul 9, 2026Updated 2 weeks ago
- Taxonomic classification of viruses at Order and Family level☆21Mar 1, 2023Updated 3 years ago
- ☆35Jun 26, 2025Updated last year
- viralVerify: viral contig verification tool☆76Feb 19, 2026Updated 5 months ago
- MetaCarvel: A scaffolder for metagenomes☆14Apr 13, 2026Updated 3 months ago
- FastViromeExplorer project. Forked from https://code.vt.edu/saima5/FastViromeExplorer☆15Jul 2, 2019Updated 7 years ago
- DeepMicrobes: taxonomic classification for metagenomics with deep learning☆107Sep 17, 2022Updated 3 years ago