Alternatives and similar repositories for DeepVirFinder

Users that are interested in DeepVirFinder are comparing it to the libraries listed below

• chklovski / CheckM2
  Assessing the quality of metagenome-derived genome bins using machine learning
  ☆244Updated 10 months ago
• gbouras13 / pharokka
  fast phage annotation program
  ☆188Updated last week
• bhattlab / MGEfinder
  A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.
  ☆124Updated 2 years ago
• MGXlab / CAT_pack
  CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…
  ☆223Updated 2 months ago
• apcamargo / genomad
  geNomad: Identification of mobile genetic elements
  ☆282Updated 2 months ago
• cmks / DAS_Tool
  DAS Tool
  ☆166Updated last year
• bluenote-1577 / sylph
  ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.
  ☆283Updated 3 months ago
• CSB5 / OPERA-MS
  OPERA-MS - Hybrid Metagenomic Assembler
  ☆99Updated last year
• AnantharamanLab / METABOLIC
  A scalable high-throughput metabolic and biogeochemical functional trait profiler
  ☆213Updated 11 months ago
• jiarong / VirSorter2
  customizable pipeline to identify viral sequences from (meta)genomic data
  ☆279Updated last year
• cruizperez / MicrobeAnnotator
  Pipeline for metabolic annotation of microbial genomes
  ☆150Updated 9 months ago
• qiyunlab / HGTector
  HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.
  ☆142Updated 2 years ago
• biobakery / phylophlan
  Precise phylogenetic analysis of microbial isolates and genomes from metagenomes
  ☆159Updated 7 months ago
• phac-nml / mob-suite
  MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies
  ☆163Updated 9 months ago
• linnabrown / run_dbcan
  Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…
  ☆155Updated 8 months ago
• AdmiralenOla / Scoary
  Pan-genome wide association studies
  ☆205Updated last year
• ParkinsonLab / Metatranscriptome-Workshop
  Metatranscriptomics Tutorial
  ☆66Updated 2 years ago
• BinPro / CONCOCT
  Clustering cONtigs with COverage and ComposiTion
  ☆135Updated 5 years ago
• neherlab / pan-genome-analysis
  Processing pipeline for pan-genome visulization and exploration
  ☆143Updated 2 years ago
• AnantharamanLab / VIBRANT
  Virus Identification By iteRative ANnoTation
  ☆184Updated last year
• rrwick / Perfect-bacterial-genome-tutorial
  ☆153Updated last year
• jessieren / VirFinder
  VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data
  ☆137Updated 5 years ago
• rrwick / Autocycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆207Updated this week
• EMBL-PKU / BASALT
  Nature Communications | BASALT (Binning Across a Series of Assemblies Toolkit) for binning and refinement of short- and long-read sequenc…
  ☆127Updated this week
• xiezhq / ISEScan
  A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome
  ☆101Updated last month
• AnantharamanLab / ViWrap
  A wrapper to identify, bin, classify, and predict host-viral relationship for viruses
  ☆85Updated last year
• BigDataBiology / SemiBin
  SemiBin: metagenomics binning with self-supervised deep learning
  ☆148Updated last month
• Finn-Lab / MAG_Snakemake_wf
  Recovery of prokaryotic genomes from shotgun metagenomic sequencing data
  ☆62Updated 4 years ago
• widdowquinn / pyani
  Application and Python module for average nucleotide identity analyses of microbes.
  ☆218Updated 6 months ago
• wwood / singlem
  Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes
  ☆177Updated last week