PanTax: Strain-level metagenomic profiling using pangenome graphs
☆49Mar 2, 2026Updated 3 weeks ago
Alternatives and similar repositories for PanTax
Users that are interested in PanTax are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Leviathan: A fast, memory-efficient, and scalable taxonomic and pathway profiler for (pan)genome-resolved metagenomics and metatranscript…☆18Mar 12, 2026Updated last week
- k-mers and the like☆22Mar 2, 2026Updated 3 weeks ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆298Feb 3, 2026Updated last month
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors☆30Aug 26, 2024Updated last year
- ☆23Sep 9, 2025Updated 6 months ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Taxonomy classification of viral sequences / contigs☆12Jul 15, 2025Updated 8 months ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆241Oct 12, 2025Updated 5 months ago
- MetaSNV, a metagenomic SNV calling pipeline.☆21Mar 25, 2022Updated 4 years ago
- MetagenOmic read Re-Assigner and abundance quantifier☆20Jan 31, 2025Updated last year
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated last year
- ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refse…☆104Updated this week
- fast, multithreaded sourmash operations: search, compare, and gather.☆25Mar 16, 2026Updated last week
- Chimera: A Versatile Metagenomic Classification Tool☆21Feb 1, 2026Updated last month
- A k-mer search engine for all Sequence Read Archive public accessions☆37Oct 29, 2024Updated last year
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers☆43Apr 8, 2024Updated last year
- A Python package for obtaining, parsing and exploring biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆48Feb 5, 2026Updated last month
- Strain-level haplotyping for metagenomes with short or long-reads.☆65Apr 10, 2025Updated 11 months ago
- A new high-resolution long-read metagenome assembler for even noisy reads☆124Updated this week
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆183Updated this week
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆54Sep 7, 2025Updated 6 months ago
- sunburst plots for taxonomy - working to update Krona☆44Sep 22, 2025Updated 6 months ago
- Reorients assembled microbial sequences☆136Aug 21, 2025Updated 7 months ago
- A repo with just adapter sequences☆15Jul 7, 2025Updated 8 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆106May 23, 2025Updated 10 months ago
- ☆46Nov 21, 2025Updated 4 months ago
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆170Jan 2, 2026Updated 2 months ago
- A Tool for low Coverage HiFi Data Assembly☆38Dec 27, 2025Updated 2 months ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆41Sep 29, 2025Updated 5 months ago
- Iterative Gene clUster Analysis, a high-throughput method for gene cluster family identification.☆17Feb 26, 2026Updated 3 weeks ago
- exploring viral genome assembly with variation graph tools☆20May 18, 2020Updated 5 years ago
- 🦠🧬🧑💻📇 Microbial genomes-to-report pipeline☆74Mar 14, 2026Updated last week
- Library of sketching functions used by PopPUNK☆31Mar 31, 2025Updated 11 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Methods to determine sequence element (unitig) presence/absence☆23Mar 6, 2026Updated 2 weeks ago
- CAMISIM: Simulating metagenomes and microbial communities☆222Feb 18, 2026Updated last month
- implicit pangenome graph☆97Mar 13, 2026Updated last week
- ☆18May 20, 2025Updated 10 months ago
- Remove human reads from a sequencing run☆48Mar 9, 2026Updated 2 weeks ago
- A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.☆45Feb 5, 2026Updated last month
- Minimum Bait Cover Toolkit Syotti.☆13Jan 22, 2025Updated last year