Alternatives and similar repositories for PanTax

Users that are interested in PanTax are comparing it to the libraries listed below

• bluenote-1577 / floria
  Strain-level haplotyping for metagenomes with short or long-reads.
  ☆51Updated last month
• JensUweUlrich / Taxor
  Fast and space-efficient taxonomic classification of long reads
  ☆43Updated last month
• raufs / skDER
  skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.
  ☆45Updated 2 weeks ago
• gtonkinhill / tracs
  Fast pairwise transmission inference from single genome and/or metagenomic data
  ☆21Updated 8 months ago
• SegataLab / viromeqc
  ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…
  ☆19Updated 2 years ago
• NickJD / ORForise
  Comparison pipeline for Prokaryote Protein Coding Gene Predictors
  ☆23Updated this week
• ikmb / MAGScoT
  MAGScoT - a MAG scoring and refinement tool
  ☆35Updated 7 months ago
• Arkadiy-Garber / SprayNPray
  Rapid and simple taxonomic profiling of genome and metagenome contigs
  ☆28Updated last year
• cruizperez / FastAAI
  ☆22Updated 4 months ago
• microbial-pangenomes-lab / microGWAS
  Bacterial GWAS analysis
  ☆40Updated last week
• althonos / pyorthoani
  A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.
  ☆25Updated last month
• snayfach / UHGV
  Unified Human Gut Virome Catalog
  ☆31Updated 10 months ago
• karel-brinda / MiniPhy
  Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]
  ☆33Updated 2 months ago
• danielpodlesny / samestr
  SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.
  ☆20Updated 2 months ago
• KatyBrown / plot_phylo
  Python package to plot a phylogenetic tree on an existing matplotlib axis.
  ☆22Updated 3 months ago
• leylabmpi / SynTracker
  SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…
  ☆31Updated 4 months ago
• HIT-ImmunologyLab / DBSCAN-SWA
  ☆32Updated last year
• lmlui / Jorg
  MAG Circularization Method
  ☆33Updated 3 years ago
• shandley / awesome-virome
  A listing of software, tools and databases useful for virome analysis
  ☆36Updated this week
• bacpop / CELEBRIMBOR
  Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs
  ☆24Updated 10 months ago
• mbhall88 / lrge
  Genome size estimation from long read overlaps
  ☆56Updated last month
• zjshi / Maast
  Microbial agile accurate SNP Typer
  ☆29Updated last year
• ku-cbd / PhageBoost
  Rapid discovery of novel prophages using biological feature engineering and machine learning
  ☆37Updated 5 months ago
• bluenote-1577 / fairy
  alignment-free coverage calculation for metagenomic binning >100 times faster
  ☆44Updated 2 months ago
• Microbiology / ccontigs
  Detect contigs of complete circular genomes
  ☆23Updated 6 years ago
• pirovc / grimer
  GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…
  ☆23Updated 2 years ago
• mathjeff / Mapper
  Genomic sequence aligner
  ☆25Updated 2 weeks ago
• ChrispinChaguza / RCandy
  RCandy: an R package for visualising homologous recombination events in bacterial genomes
  ☆22Updated 2 years ago
• treangenlab / lemur
  Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets
  ☆24Updated last week
• bacpop / mandrake
  Mandrake 🌿/👨‍🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding
  ☆38Updated 3 months ago