PanTax: Strain-level metagenomic profiling using pangenome graphs
☆52Mar 26, 2026Updated last month
Alternatives and similar repositories for PanTax
Users that are interested in PanTax are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Leviathan: A fast, memory-efficient, and scalable taxonomic and pathway profiler for (pan)genome-resolved metagenomics and metatranscript…☆19Mar 12, 2026Updated last month
- k-mers and the like☆22Apr 27, 2026Updated last week
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆301Feb 3, 2026Updated 3 months ago
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors☆30Aug 26, 2024Updated last year
- ☆23Sep 9, 2025Updated 7 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Taxonomy classification of viral sequences / contigs☆12Jul 15, 2025Updated 9 months ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆249Oct 12, 2025Updated 6 months ago
- MetaSNV, a metagenomic SNV calling pipeline.☆21Mar 25, 2022Updated 4 years ago
- MetagenOmic read Re-Assigner and abundance quantifier☆20Jan 31, 2025Updated last year
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated last year
- ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refse…☆104Apr 23, 2026Updated last week
- fast, multithreaded sourmash operations: search, compare, and gather.☆25Apr 27, 2026Updated last week
- Chimera: A Versatile Metagenomic Classification Tool☆21Feb 1, 2026Updated 3 months ago
- A k-mer search engine for all Sequence Read Archive public accessions☆39Oct 29, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers☆43Apr 8, 2024Updated 2 years ago
- A Python package for obtaining, parsing and exploring biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆50Apr 24, 2026Updated last week
- Strain-level haplotyping for metagenomes with short or long-reads.☆66Apr 10, 2025Updated last year
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆185Apr 16, 2026Updated 2 weeks ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆56Updated this week
- A new high-resolution long-read metagenome assembler for even noisy reads☆146Apr 5, 2026Updated 3 weeks ago
- sunburst plots for taxonomy - working to update Krona☆44Sep 22, 2025Updated 7 months ago
- Reorients assembled microbial sequences☆137Aug 21, 2025Updated 8 months ago
- A repo with just adapter sequences☆15Jul 7, 2025Updated 9 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆47Nov 21, 2025Updated 5 months ago
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆174Apr 6, 2026Updated 3 weeks ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆108May 23, 2025Updated 11 months ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆41Sep 29, 2025Updated 7 months ago
- Iterative Gene clUster Analysis, a high-throughput method for gene cluster family identification.☆17Feb 26, 2026Updated 2 months ago
- exploring viral genome assembly with variation graph tools☆20May 18, 2020Updated 5 years ago
- 🦠🧬🧑💻📇 Microbial genomes-to-report pipeline☆74Mar 14, 2026Updated last month
- Library of sketching functions used by PopPUNK☆31Mar 31, 2025Updated last year
- Methods to determine sequence element (unitig) presence/absence☆24Mar 6, 2026Updated last month
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- CAMISIM: Simulating metagenomes and microbial communities☆224Apr 21, 2026Updated last week
- A Tool for low Coverage HiFi Data Assembly☆42Dec 27, 2025Updated 4 months ago
- implicit pangenome graph☆101Apr 24, 2026Updated last week
- ☆19May 20, 2025Updated 11 months ago
- Remove human reads from a sequencing run☆48Apr 27, 2026Updated last week
- Minimum Bait Cover Toolkit Syotti.☆15Jan 22, 2025Updated last year
- Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆47Apr 1, 2025Updated last year