PanTax: Strain-level metagenomic profiling using pangenome graphs
☆54Jun 10, 2026Updated 4 months ago
Alternatives and similar repositories for PanTax
Users that are interested in PanTax are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MetagenOmic read Re-Assigner and abundance quantifier☆22Jun 24, 2026Updated 4 months ago
- Taxonomy classification of viral sequences / contigs☆13Jul 15, 2025Updated last year
- Leviathan: Fast, memory-efficient, and scalable taxonomic and pathway profiling for (pan)genome-resolved metagenomics and metatranscripto…☆30Oct 26, 2026Updated last week
- A high-resolution long-read metagenome assembler for even noisy reads. Myloasm assembles strain-resolved, circular + complete genomes fro…☆176Oct 11, 2026Updated 3 weeks ago
- gemsparcl 💎✨ Rapid and consistent clustering of millions of genomes highlights the diversity of prokaryotic life☆19Jun 16, 2026Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Strain-level haplotyping for metagenomes with short or long-reads.☆71Apr 10, 2025Updated last year
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆332Oct 10, 2026Updated 3 weeks ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆66Updated this week
- k-mers and the like☆22Oct 18, 2026Updated 2 weeks ago
- Chimera: A Versatile Metagenomic Classification Tool☆21Oct 20, 2026Updated 2 weeks ago
- Repeat and haplotype aware error correction in nanopore sequencing reads with DeChat☆30Apr 24, 2026Updated 6 months ago
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆186Oct 18, 2026Updated 2 weeks ago
- Strain-level abundance analysis tool for short-read metagenomics☆12Jul 12, 2026Updated 3 months ago
- A SIMD-accelerated library to compute random minimizers☆49Oct 26, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Fast DNA search and [host] depletion using minimizers☆128Oct 26, 2026Updated last week
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆38Apr 23, 2025Updated last year
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLog☆23Updated this week
- NCBI Taxonomy History Browser☆10May 7, 2026Updated 5 months ago
- Remove human reads from a sequencing run☆53Jun 29, 2026Updated 4 months ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆49Sep 18, 2026Updated last month
- ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refse…☆109Oct 27, 2026Updated last week
- Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆49Jun 19, 2026Updated 4 months ago
- Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets☆25Apr 30, 2026Updated 6 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆199Updated this week
- Precise host read removal☆134Apr 13, 2026Updated 6 months ago
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors☆34Aug 26, 2024Updated 2 years ago
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆239May 9, 2026Updated 5 months ago
- Plasmid analysis using rearrangement distances☆56Jul 19, 2026Updated 3 months ago
- Taxonomy manipulation for sylph (new version)☆12Sep 18, 2026Updated last month
- sunburst plots for taxonomy - working to update Krona☆48Sep 22, 2025Updated last year
- ☆20Sep 16, 2026Updated last month
- ☆11Dec 18, 2025Updated 10 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- How many distinct k-mers are there in a sequence?☆11Oct 26, 2026Updated last week
- Mumemto: multi-MUM and MEM finding across pangenomes☆140Sep 21, 2026Updated last month
- Fast average nucleotide identity (ANI) calculator for bacterial genomes, MAGs, and contigs. Supports genome comparisons and large-scale d…☆270Oct 14, 2026Updated 2 weeks ago
- CAMISIM: Simulating metagenomes and microbial communities☆234Jul 16, 2026Updated 3 months ago
- Viral genome coverage evaluation for metagenomic diagnostics☆27Jul 9, 2026Updated 3 months ago
- ☆10Jun 9, 2025Updated last year
- A k-mer search engine for all Sequence Read Archive public accessions☆46May 13, 2026Updated 5 months ago