GDmicro - Use GCN and Deep adaptation network to classify host disease status based on human gut microbiome data.
☆11Mar 22, 2024Updated 2 years ago
Alternatives and similar repositories for GDmicro
Users that are interested in GDmicro are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- HOTSPOT is a hierarchical host prediction tool for plasmid contigs using Transformer.☆10Apr 22, 2024Updated 2 years ago
- An RNA virus strain-level identification tool for short reads.☆23Apr 6, 2026Updated 3 months ago
- High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers☆44Apr 8, 2024Updated 2 years ago
- Virus Identification☆27May 26, 2025Updated last year
- A viral haplotype reconstruction tool for long reads.☆16Jun 3, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- GenePiper☆12Mar 13, 2022Updated 4 years ago
- RNASeq-Pipeline for Quantification and Enrichment Analysis☆12May 30, 2024Updated 2 years ago
- ☆36Apr 15, 2024Updated 2 years ago
- ☆35Oct 6, 2025Updated 9 months ago
- 16s Qiime2 pipeline☆17Sep 26, 2018Updated 7 years ago
- ☆13Feb 27, 2020Updated 6 years ago
- Repository for Host-Pathogen Phylogeny Project. Paper DOI: 10.1038/nature22975☆15May 7, 2020Updated 6 years ago
- 宏基因组、代谢组和表型信息关联分析☆11Nov 15, 2018Updated 7 years ago
- A pipeline to identify gene family using mutiple tools and scripts.☆11Aug 22, 2021Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆23Dec 4, 2023Updated 2 years ago
- VirBot: a protein-based RNA virus detector for metagenomic data☆34Jul 29, 2024Updated last year
- A fork for the old hhsuite-2.0.16☆13Nov 27, 2020Updated 5 years ago
- CATH: high-throughput protein structure/function annotations☆12Dec 17, 2019Updated 6 years ago
- Multi-Teacher Distillation for Protein embedding☆12May 31, 2024Updated 2 years ago
- Manipulate genomic features and validate the syntax and reference sequence of your GFF3 files☆10Dec 26, 2022Updated 3 years ago
- Phage virion protein classifier☆14Nov 6, 2024Updated last year
- Load Google's pre-trained Word2Vec model using gensim APIs☆13Jun 9, 2017Updated 9 years ago
- ☆11Mar 25, 2019Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Code and machine learning models (FRIGHT and AFRAID) for predicting chronological age and lifespan from a 31-parameter murine frailty ind…☆12Apr 3, 2020Updated 6 years ago
- 基于大模型构建的在线 AI 问诊的多智能体宠物医生 Agent。系统面向多种常见宠物疾病,整合并构建高质量的知识库,能够通过多轮对话实现智能化问诊。项目结合 Prompt Engineering 与 LangGraph 框架,支持用户与智能体之间的自然交互,最终为用户提供个…☆24Oct 13, 2025Updated 9 months ago
- S2F: protein function without experiments☆16Nov 24, 2025Updated 8 months ago
- ☆18Jan 2, 2025Updated last year
- DeePhase predictor of homotypic liquid-liquid phase separation of proteins & the code associated with the paper "Learning the molecular g…☆20Dec 30, 2021Updated 4 years ago
- GCN classifier for phage taxanomy classification☆32Nov 6, 2024Updated last year
- Code for paper titled, "Beyond Homology Transfer: Deep Learning for Automated Annotation of Proteins". Preprint available at: http://www.…☆19Jul 26, 2017Updated 9 years ago
- An Improved Algorithm to Measure the Semantic Similarity of Gene Ontology Terms☆19Mar 23, 2020Updated 6 years ago
- Codes for our NPNT paper at Nature Metabolism☆15Feb 9, 2024Updated 2 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Learning the basics of reading and writing files in Python.☆10Mar 23, 2026Updated 4 months ago
- Unsupervised neural network for learning embeddings of GO terms.☆21Feb 19, 2022Updated 4 years ago
- viralVerify: viral contig verification tool☆76Feb 19, 2026Updated 5 months ago
- Intro to Shell for Bioinformatics - with STG examples☆28Jul 12, 2016Updated 10 years ago
- GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions☆22Sep 5, 2023Updated 2 years ago
- Use PostgreSQL's planner hook to open a side entrance through which we can pass plan trees for immediate execution☆28Jun 10, 2025Updated last year
- pathway based data integration and visualization☆49Mar 28, 2025Updated last year