liaoherui / GDmicroView external linksLinks
GDmicro - Use GCN and Deep adaptation network to classify host disease status based on human gut microbiome data.
☆11Mar 22, 2024Updated last year
Alternatives and similar repositories for GDmicro
Users that are interested in GDmicro are comparing it to the libraries listed below
Sorting:
- HOTSPOT is a hierarchical host prediction tool for plasmid contigs using Transformer.☆10Apr 22, 2024Updated last year
- An RNA virus strain-level identification tool for short reads.☆23Jan 29, 2026Updated 2 weeks ago
- High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers☆43Apr 8, 2024Updated last year
- 16s Qiime2 pipeline☆16Sep 26, 2018Updated 7 years ago
- Virus Identification☆25May 26, 2025Updated 8 months ago
- ☆32Apr 15, 2024Updated last year
- VirBot: a protein-based RNA virus detector for metagenomic data☆34Jul 29, 2024Updated last year
- ☆10May 14, 2025Updated 9 months ago
- ☆34Oct 6, 2025Updated 4 months ago
- 宏基因组、代谢组和表型信息关联分析☆11Nov 15, 2018Updated 7 years ago
- Learning the basics of reading and writing files in Python.☆10Mar 16, 2021Updated 4 years ago
- Standardized and Automated MetaBarcoding Analyses workflow (Mirror)☆13Jun 28, 2023Updated 2 years ago
- Week 3 of the OSU CoMS Webinar: Introduction to Amplicon Sequencing (QIIME, DADA2, mothur) and Ecological Statistics☆10May 28, 2023Updated 2 years ago
- ☆10Jan 20, 2022Updated 4 years ago
- Automated pipeline for amplicon sequence analysis☆11Nov 25, 2025Updated 2 months ago
- Rapid identification of Staphylococcus aureus agr locus type and agr operon variants.☆10Jan 6, 2023Updated 3 years ago
- ☆11Apr 5, 2021Updated 4 years ago
- Tutorial for Metagenomics Analyses☆10Jun 16, 2020Updated 5 years ago
- rapid serotyping of Vibrio parahaemolyticus from whole genome sequencing data using serogroup-specific genes☆10Sep 2, 2021Updated 4 years ago
- ☆10Dec 22, 2025Updated last month
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆10Jan 21, 2022Updated 4 years ago
- screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics☆11Oct 29, 2020Updated 5 years ago
- ☆10Aug 29, 2012Updated 13 years ago
- ☆10Apr 17, 2021Updated 4 years ago
- genetic distance plotting for recombination events analysis☆10Nov 21, 2024Updated last year
- Integrative virome pipeline☆13Nov 4, 2024Updated last year
- Python Programming for Biologists☆12Dec 3, 2025Updated 2 months ago
- A microbial genomic analysis pipeline used by the Djordjevic Lab☆13Feb 9, 2025Updated last year
- Our laboratory repository☆11Jan 12, 2021Updated 5 years ago
- Fast genealogical relationship evaluation of bacterial isolates with WGS data.☆12Jan 17, 2022Updated 4 years ago
- 🦠🧬 Unraveling Viral Genomes from Metagenomes☆10Oct 3, 2025Updated 4 months ago
- Antimicrobial Resistance Analysis☆10Jun 11, 2024Updated last year
- FluMut is a command-line tool to find markers of interest in H5N1 avian influenza viruses.☆13Feb 3, 2026Updated last week
- interactive barplot for amplicon sequencing☆13Dec 5, 2024Updated last year
- Screening Historical Events of Recombination in a Phylogeny via Ancestral Sequences☆10Sep 3, 2025Updated 5 months ago
- Frailty analysis including FRIGHT age and AFRAID clock☆12Apr 3, 2020Updated 5 years ago
- A pipeline to identify gene family using mutiple tools and scripts.☆11Aug 22, 2021Updated 4 years ago
- Code for de novo discovery of viral families in virome data☆16Jun 20, 2024Updated last year
- Quality control plotting for long reads☆10May 14, 2024Updated last year