Alternatives and similar repositories for PhaBOX

Users that are interested in PhaBOX are comparing it to the libraries listed below

• linxingchen / cobra
  A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…
  ☆70Updated 9 months ago
• AnantharamanLab / ViWrap
  A wrapper to identify, bin, classify, and predict host-viral relationship for viruses
  ☆72Updated 5 months ago
• chengsly / DeepMicroClass
  ☆28Updated 3 months ago
• DrKaiyangZheng / VITAP
  The viral taxonomic assignment pipeline
  ☆24Updated 3 months ago
• AnantharamanLab / vRhyme
  Binning Virus Genomes from Metagenomes
  ☆63Updated 2 years ago
• ziyewang / MetaBinner
  ☆54Updated last year
• Kalan-Lab / zol
  zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
  ☆59Updated last week
• EBI-Metagenomics / mettannotator
  ☆71Updated last month
• apcamargo / ictv-mmseqs2-protein-database
  ☆32Updated 3 months ago
• endixk / ezaai
  EzAAI - High Throughput Prokaryotic AAI Calculator
  ☆41Updated 7 months ago
• raw-lab / MetaCerberus
  Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…
  ☆58Updated last month
• GreyGuoweiChen / VirBot
  VirBot: a protein-based RNA virus detector for metagenomic data
  ☆30Updated 10 months ago
• XiaofangJ / PhaseFinder
  A pipeline to computationally identify invertible DNA regions and quantify their orientations.
  ☆29Updated last year
• moshi4 / ANIclustermap
  A tool for drawing ANI clustermap between all-vs-all microbial genomes
  ☆81Updated last month
• ziyewang / COMEBin
  ☆53Updated last year
• samnooij / PathoFact
  Altered version of PathoFact to work more conveniently with SLURM and large input files
  ☆12Updated 6 months ago
• RyanCook94 / inphared
  Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.
  ☆68Updated last month
• RasmussenLab / phamb
  Downstream processing of VAMB binning for Viral Elucidation
  ☆50Updated 11 months ago
• snayfach / MGV
  Supporting code for uncultivated gut virus manuscript
  ☆72Updated last year
• Hydro3639 / NanoPhase
  Reference-quality genome reconstruction from complex metagenomes (or bacterial isolates) using only Nanopore long reads or both long and …
  ☆32Updated last year
• HubertTang / PLASMe
  ☆27Updated last year
• mdsufz / MuDoGeR
  MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.
  ☆88Updated 9 months ago
• BigDataBiology / argNorm
  ARG normalization by mapping to the ARO ontology.
  ☆57Updated last month
• cultivarium / MicrobeMod
  A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing
  ☆48Updated 3 weeks ago
• CristinaMoraru / VIRIDIC
  VIRIDIC (Virus Intergenomic Distance Calculator) computes pairwise intergenomic distances/similarities amongst viral genomes.
  ☆15Updated last year
• caozhichongchong / arg_ranker
  ☆29Updated last week
• annejong / BAGEL4
  ☆15Updated last year
• snayfach / UHGV
  Unified Human Gut Virome Catalog
  ☆31Updated 10 months ago
• ZiyueYang01 / VirID
  VirID: An integrated platform for the discovery and characterization of RNA Viruses
  ☆21Updated 3 months ago
• songweizhi / MetaCHIP
  Horizontal gene transfer (HGT) identification pipeline
  ☆58Updated 2 years ago