Local version of the virus identification and analysis web server (tool set)
☆99Feb 5, 2026Updated last month
Alternatives and similar repositories for PhaBOX
Users that are interested in PhaBOX are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆35Jun 26, 2025Updated 8 months ago
- Accurate identification of bacteriophages from metagenomic data using Transformer☆22Nov 6, 2024Updated last year
- Host prediction for phages☆26Nov 6, 2024Updated last year
- customizable pipeline to identify viral sequences from (meta)genomic data☆283Nov 28, 2024Updated last year
- PhaTYP: Predicting lifestyle for bacteriophages using BERT☆16Nov 6, 2024Updated last year
- GCN classifier for phage taxanomy classification☆31Nov 6, 2024Updated last year
- Virus Identification☆25May 26, 2025Updated 9 months ago
- geNomad: Identification of mobile genetic elements☆296Updated this week
- The viral taxonomic assignment pipeline☆43Feb 5, 2026Updated last month
- Phage Annotation using Protein Structures☆154Feb 9, 2026Updated last month
- a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree☆35Sep 20, 2022Updated 3 years ago
- Graph convolutional neural network for host prediction☆18Jul 13, 2025Updated 8 months ago
- fast phage annotation program☆199Feb 1, 2026Updated last month
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆86Dec 27, 2024Updated last year
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆41Feb 26, 2026Updated 3 weeks ago
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆81Dec 4, 2025Updated 3 months ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆82Sep 8, 2025Updated 6 months ago
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆38Mar 25, 2025Updated 11 months ago
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆23Nov 24, 2025Updated 4 months ago
- A tool for identifying phages and plasmids from metagenomic fragments using deep learning☆44Apr 13, 2021Updated 4 years ago
- ☆34Oct 6, 2025Updated 5 months ago
- Repository for general metagenomics Nextflow pipeline☆24Mar 10, 2026Updated 2 weeks ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆241Oct 12, 2025Updated 5 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆298Feb 3, 2026Updated last month
- Identifying viruses from metagenomic data by deep learning☆150Jun 1, 2025Updated 9 months ago
- VirBot: a protein-based RNA virus detector for metagenomic data☆34Jul 29, 2024Updated last year
- Predict prokaryotic host for phage metagenomic sequences☆55Sep 17, 2024Updated last year
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆80Apr 16, 2025Updated 11 months ago
- Systematic search of all known anti-phage systems.☆149Jan 22, 2026Updated 2 months ago
- Nature Communications | BASALT (Binning Across a Series of Assemblies Toolkit) for binning and refinement of short- and long-read sequenc…☆128Feb 8, 2026Updated last month
- Variational autoencoder for metagenomic binning☆319Feb 23, 2026Updated last month
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆323Mar 18, 2026Updated last week
- Phage virion protein classifier☆14Nov 6, 2024Updated last year
- Assessing the quality of metagenome-derived genome bins using machine learning☆252Mar 20, 2025Updated last year
- Supporting code for uncultivated gut virus manuscript☆78Jul 17, 2023Updated 2 years ago
- Virus Identification By iteRative ANnoTation☆190Apr 15, 2024Updated last year
- Prophage Activity Estimator☆32May 30, 2024Updated last year
- viral Host UnveiLing Kit (vHULK)☆14May 15, 2025Updated 10 months ago
- Code used to analyse and plot metadata of metagenomic binning tools☆14Aug 22, 2024Updated last year