KennthShang / PhaBOXLinks
Local version of the virus identification and analysis web server (tool set)
☆61Updated this week
Alternatives and similar repositories for PhaBOX
Users that are interested in PhaBOX are comparing it to the libraries listed below
Sorting:
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆70Updated 10 months ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆73Updated 6 months ago
- Binning Virus Genomes from Metagenomes☆65Updated 2 years ago
- ☆29Updated 4 months ago
- ☆72Updated last month
- The viral taxonomic assignment pipeline☆26Updated 3 months ago
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆83Updated last month
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆67Updated 2 months ago
- ☆54Updated last year
- VirBot: a protein-based RNA virus detector for metagenomic data☆30Updated 10 months ago
- ☆32Updated 4 months ago
- ☆27Updated last year
- ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Dat…☆54Updated 3 months ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆58Updated 2 months ago
- ☆30Updated 3 weeks ago
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆95Updated 2 years ago
- ☆20Updated last year
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆88Updated 10 months ago
- Supporting code for uncultivated gut virus manuscript☆72Updated last year
- ☆52Updated last year
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆62Updated 6 months ago
- ☆34Updated this week
- ARG normalization by mapping to the ARO ontology.☆57Updated this week
- Horizontal gene transfer (HGT) identification pipeline☆59Updated 2 years ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆121Updated last year
- Reference-quality genome reconstruction from complex metagenomes (or bacterial isolates) using only Nanopore long reads or both long and …☆32Updated last year
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated last week
- Altered version of PathoFact to work more conveniently with SLURM and large input files☆12Updated 7 months ago
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆29Updated last year
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆60Updated 4 years ago