dyxstat / ViralCCLinks
ViralCC: leveraging metagenomic proximity-ligation to retrieve complete viral genomes
☆16Updated last year
Alternatives and similar repositories for ViralCC
Users that are interested in ViralCC are comparing it to the libraries listed below
Sorting:
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆18Updated last year
- Set of utilities on sequences and BAM files☆26Updated 3 years ago
- ☆33Updated last year
- viralFlye pipeline☆18Updated last year
- SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.☆24Updated this week
- Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.☆22Updated 4 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 5 months ago
- Tool for unsupervised contig binning from viral metagenomes☆17Updated 3 years ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆31Updated 2 months ago
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆66Updated last year
- HiCBin: binning metagenomic contigs and recovering metagenome-assembled genomes using Hi-C contact maps☆14Updated 2 years ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆39Updated last year
- ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs☆37Updated 7 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 2 months ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- VirBot: a protein-based RNA virus detector for metagenomic data☆34Updated last year
- strain-level analysis tools☆39Updated 11 months ago
- ☆58Updated last year
- ☆16Updated last week
- Phylogeny Enhanded Prediction of PAN-genome☆42Updated 5 years ago
- Microbial agile accurate SNP Typer☆29Updated last year
- Taxonomic classification of viruses at Order and Family level☆21Updated 2 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated last year
- Automated strain separation of low-complexity metagenomes☆50Updated 3 years ago
- An algorithm for clustering metagenomic sequences.☆39Updated 6 months ago
- Phasing for metagenomics using PacBio long reads☆16Updated 4 years ago
- viralComplete: BLAST-based viral completeness verification☆24Updated 4 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆34Updated last month
- ☆61Updated last year
- This repository contains R code for building a heatmap and histogram with the output of FastANI☆18Updated 4 years ago