Alternatives and similar repositories for ViralCC:

Users that are interested in ViralCC are comparing it to the libraries listed below

• HIT-ImmunologyLab / DBSCAN-SWA
  ☆31Updated last year
• AnantharamanLab / PropagAtE
  Prophage Activity Estimator
  ☆26Updated 8 months ago
• SegataLab / cmseq
  Set of utilities on sequences and BAM files
  ☆26Updated 3 years ago
• cerebis / bin3C
  Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.
  ☆23Updated this week
• Serka-M / Digester-MultiSequencing
  Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing
  ☆21Updated 2 years ago
• Shamir-Lab / SCAPP
  SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…
  ☆31Updated last year
• snayfach / UHGV
  Unified Human Gut Virome Catalog
  ☆27Updated 7 months ago
• cai91 / GPD
  This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"
  ☆20Updated 4 years ago
• michaelkyu / PlasX
  PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture
  ☆32Updated 3 years ago
• biocom-uib / vpf-tools
  Virus Protein Family tools
  ☆29Updated 2 years ago
• ziyewang / MetaBinner
  ☆50Updated 11 months ago
• feargalr / Demovir
  Taxonomic classification of viruses at Order and Family level
  ☆20Updated last year
• apcamargo / ictv-mmseqs2-protein-database
  ☆28Updated this week
• wtmatlock / flanker
  Gene-flank analysis tool
  ☆27Updated 2 months ago
• ablab / metaGT
  Pipeline for metagenome and metatranscriptome joint assembly
  ☆20Updated last year
• dyxstat / HiCBin
  HiCBin: binning metagenomic contigs and recovering metagenome-assembled genomes using Hi-C contact maps
  ☆13Updated last year
• Orin-beep / HOTSPOT
  HOTSPOT is a hierarchical host prediction tool for plasmid contigs using Transformer.
  ☆10Updated 10 months ago
• zoubohao / Deepurify
  Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.
  ☆15Updated 3 weeks ago
• AuReMe / emapper2gbk
  Convert GFF, fastas, annotation table and species name into Genbank.
  ☆14Updated 10 months ago
• endixk / ezaai
  EzAAI - High Throughput Prokaryotic AAI Calculator
  ☆38Updated 4 months ago
• Magdoll / MagPhase
  Phasing for metagenomics using PacBio long reads
  ☆17Updated 3 years ago
• RasmussenLab / phamb
  Downstream processing of VAMB binning for Viral Elucidation
  ☆48Updated 7 months ago
• gatech-genemark / MetaGeneMark-2
  MetaGeneMark-2: Improved Gene Prediction in Metagenomes
  ☆18Updated 11 months ago
• Yasas1994 / Jaeger
  Jaeger is a quick and precise tool for detecting phages in sequence assemblies.
  ☆25Updated 3 months ago
• danielpodlesny / samestr
  SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.
  ☆17Updated 5 months ago
• TingtZHENG / VirMiner
  Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates
  ☆18Updated 4 years ago
• lazzarigioele / graphanalyzer
  This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…
  ☆18Updated last year
• adamhockenberry / bacphlip
  A python library for predicting phage lifestyle based on genome sequence
  ☆35Updated last year
• Arkadiy-Garber / SprayNPray
  Rapid and simple taxonomic profiling of genome and metagenome contigs
  ☆27Updated last year
• zjshi / Maast
  Microbial agile accurate SNP Typer
  ☆29Updated last year