ViralCC: leveraging metagenomic proximity-ligation to retrieve complete viral genomes
☆18Feb 3, 2026Updated 3 months ago
Alternatives and similar repositories for ViralCC
Users that are interested in ViralCC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MetaCC allows scalable and integrative analyses of both long-read and short-read metagenomic Hi-C data☆12Mar 8, 2025Updated last year
- VStrains is a de novo approach for reconstructing strains from viral quasispecies.☆24Feb 22, 2026Updated 2 months ago
- Reference-free quality assessment for Hi-C sequencing data☆13Apr 30, 2024Updated 2 years ago
- HiCBin: binning metagenomic contigs and recovering metagenome-assembled genomes using Hi-C contact maps☆14May 4, 2023Updated 3 years ago
- ☆17Apr 21, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- The software involved in the MetaPhase project, as described in G3 (http://dx.doi.org/10.1534/g3.114.011825)☆17Oct 12, 2018Updated 7 years ago
- ☆26Jun 26, 2025Updated 10 months ago
- (check out instaGRAAL for a faster, updated program!) This program is from Marie-Nelly et al., Nature Communications, 2014 (High-qualit…☆15Nov 22, 2022Updated 3 years ago
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆19Nov 29, 2023Updated 2 years ago
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆69Sep 26, 2024Updated last year
- Virus Identification☆26May 26, 2025Updated 11 months ago
- Repository for codes, analyses and visualizations for the CAMI II challenges☆14Sep 4, 2023Updated 2 years ago
- Minimum Bait Cover Toolkit Syotti.☆15Jan 22, 2025Updated last year
- Downstream processing of VAMB binning for Viral Elucidation☆55Jul 3, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- GpC methylation from fast5:s to reference anchored calls☆10Nov 18, 2020Updated 5 years ago
- The viral taxonomic assignment pipeline☆43Apr 16, 2026Updated 2 weeks ago
- Computes a consensus sequence with wobbles, ambiguous bases, and in-frame insertions, from a NGS read alignment.☆18May 14, 2018Updated 7 years ago
- Viral protein family functional prediction using protein language models☆23Jan 6, 2026Updated 3 months ago
- Set of utilities on sequences and BAM files☆27Oct 27, 2021Updated 4 years ago
- PhaTYP: Predicting lifestyle for bacteriophages using BERT☆17Nov 6, 2024Updated last year
- geNomad: Identification of mobile genetic elements☆304Mar 29, 2026Updated last month
- ☆35Jun 26, 2025Updated 10 months ago
- a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree☆36Sep 20, 2022Updated 3 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆24Updated this week
- AMBER: Assessment of Metagenome BinnERs☆33Apr 14, 2026Updated 2 weeks ago
- ☆23Feb 7, 2022Updated 4 years ago
- ARG normalization by mapping to the ARO ontology.☆65Apr 25, 2026Updated last week
- ☆11Dec 22, 2025Updated 4 months ago
- Strain Resolution ON Graphs☆50Jul 18, 2023Updated 2 years ago
- ☆19Dec 6, 2022Updated 3 years ago
- viralFlye pipeline☆19Aug 12, 2024Updated last year
- A nextflow version of the Wochenende reference metagenome binning and visualization pipeline☆16Mar 4, 2026Updated 2 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Code for de novo discovery of viral families in virome data☆16Jun 20, 2024Updated last year
- MetaCompass: Reference-guided Assembly of Metagenomes☆43Apr 13, 2026Updated 3 weeks ago
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆25Jun 26, 2025Updated 10 months ago
- A Survey of Canteen Desserts at Institut Pasteur☆12Nov 18, 2022Updated 3 years ago
- Tools for extracting individual genomes from metagenomes☆16Dec 4, 2023Updated 2 years ago
- Improvement of metagenome-assembled genomes☆58Mar 17, 2020Updated 6 years ago
- A quick workflow to get researchers started with the bioinformatic pipeline used in the Environmental Metagenomics program.☆13Feb 17, 2025Updated last year