ZiyueYang01 / VirIDLinks
VirID: An integrated platform for the discovery and characterization of RNA Viruses
☆22Updated 4 months ago
Alternatives and similar repositories for VirID
Users that are interested in VirID are comparing it to the libraries listed below
Sorting:
- VirBot: a protein-based RNA virus detector for metagenomic data☆31Updated 11 months ago
- Virus Identification☆22Updated last month
- Exploring the "dusk matter" of the RNA virosphere☆35Updated 3 years ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆50Updated 5 months ago
- ☆32Updated 4 months ago
- ☆72Updated this week
- This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"☆20Updated 4 years ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆87Updated last month
- A toolkit for prokaryotic comparative genomics☆49Updated 5 months ago
- A python library for predicting phage lifestyle based on genome sequence☆38Updated last year
- Pipeline for major biological analyses.☆35Updated 3 years ago
- A workflow and scripts for large-scale antiSMASH analyses☆41Updated 3 months ago
- Unified Human Gut Virome Catalog☆32Updated 11 months ago
- Taxonomic classification of viruses at Order and Family level☆20Updated 2 years ago
- ☆30Updated 6 months ago
- Repository for general metagenomics Nextflow pipeline☆22Updated 2 weeks ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆42Updated last week
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆29Updated last year
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆39Updated 2 years ago
- UFCG: Universal Fungal Core Genes☆34Updated 5 months ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆34Updated last year
- VIRIDIC (Virus Intergenomic Distance Calculator) computes pairwise intergenomic distances/similarities amongst viral genomes.☆16Updated last year
- ☆55Updated last year
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆37Updated 3 years ago
- ☆31Updated 2 weeks ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆32Updated 2 years ago
- ☆56Updated last year
- Predict prokaryotic host for phage metagenomic sequences☆52Updated 10 months ago
- The viral taxonomic assignment pipeline☆26Updated 4 months ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆49Updated last month