VirID: An integrated platform for the discovery and characterization of RNA Viruses
☆25Jan 8, 2026Updated 5 months ago
Alternatives and similar repositories for VirID
Users that are interested in VirID are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- VirBot: a protein-based RNA virus detector for metagenomic data☆34Jul 29, 2024Updated last year
- The viral taxonomic assignment pipeline☆44Apr 16, 2026Updated 2 months ago
- This is a deep learning method for identification of viral contigs with short length from metagenomic data.☆10Dec 20, 2021Updated 4 years ago
- Virus Identification☆26May 26, 2025Updated last year
- LucaProt: A novel deep learning framework that incorporates protein amino acid sequence and structural information to predict protein fun…☆226Jan 29, 2026Updated 4 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Exploring the "dusk matter" of the RNA virosphere☆39Mar 25, 2022Updated 4 years ago
- a novel encoding method for viral identification in metagenomics☆15Sep 20, 2023Updated 2 years ago
- ☆15May 22, 2025Updated last year
- ☆22Sep 26, 2025Updated 8 months ago
- Taxonomic classification of viruses at Order and Family level☆21Mar 1, 2023Updated 3 years ago
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆19Nov 29, 2023Updated 2 years ago
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆53Jun 2, 2026Updated 2 weeks ago
- Main development repository for SpreadGL☆22Sep 30, 2024Updated last year
- We developed a dual-channel model named LucaPCycle, based on the raw sequence and protein language large models, to predict whether a pro…☆36Apr 28, 2026Updated last month
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- An open database of vertebrate-virus interactions☆43Jun 9, 2026Updated last week
- A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.☆20Jul 24, 2023Updated 2 years ago
- Cenote-Taker2: Discover and Annotate Divergent Viral Contigs (Please use Cenote-Taker 3 instead)☆56Jan 19, 2024Updated 2 years ago
- blastn2dotplots: multiple dot-plot visualizer☆24Sep 15, 2025Updated 9 months ago
- ☆27May 17, 2026Updated last month
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆38Apr 9, 2026Updated 2 months ago
- A simple fastp-MultiQC nextflow pipeline☆12Feb 2, 2023Updated 3 years ago
- LucaVirus: Modeling the Evolutionary and Functional Landscape of Viruses with a Unified Genome-Protein Language Model☆70May 25, 2026Updated 3 weeks ago
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆46Jun 1, 2026Updated 2 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆44Apr 4, 2023Updated 3 years ago
- 🦠🧬 Unraveling Viral Genomes from Metagenomes☆11Oct 3, 2025Updated 8 months ago
- Computation of average nucleotide identity with the use of MMseqs2☆24Dec 11, 2024Updated last year
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆179Apr 6, 2026Updated 2 months ago
- A selenium spider for GISAID☆10Apr 10, 2023Updated 3 years ago
- Discover and annotate the virome☆63Jun 10, 2026Updated last week
- viral-ngs: complete pipelines☆74Jun 10, 2026Updated last week
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆90Dec 27, 2024Updated last year
- Code for de novo discovery of viral families in virome data☆16Jun 20, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Fast viral consensus genome reconstruction☆27Feb 5, 2026Updated 4 months ago
- Fast and flexible ORF finder☆82Jan 17, 2022Updated 4 years ago
- Prophage Activity Estimator☆33May 30, 2024Updated 2 years ago
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…☆13Feb 13, 2023Updated 3 years ago
- ☆23Apr 13, 2026Updated 2 months ago
- NCBI taxonomic identifier (taxid) changelog, including taxids deletion, new adding, merge, reuse, and rank/name changes.☆28May 15, 2026Updated last month
- Accurate identification of bacteriophages from metagenomic data using Transformer☆22Nov 6, 2024Updated last year