VirID: An integrated platform for the discovery and characterization of RNA Viruses
☆23Jan 8, 2026Updated 2 months ago
Alternatives and similar repositories for VirID
Users that are interested in VirID are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- VirBot: a protein-based RNA virus detector for metagenomic data☆34Jul 29, 2024Updated last year
- The viral taxonomic assignment pipeline☆43Feb 5, 2026Updated last month
- This is a deep learning method for identification of viral contigs with short length from metagenomic data.☆10Dec 20, 2021Updated 4 years ago
- Virus Identification☆25May 26, 2025Updated 10 months ago
- LucaProt: A novel deep learning framework that incorporates protein amino acid sequence and structural information to predict protein fun…☆223Jan 29, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Exploring the "dusk matter" of the RNA virosphere☆37Mar 25, 2022Updated 4 years ago
- ☆20Sep 26, 2025Updated 6 months ago
- a novel encoding method for viral identification in metagenomics☆15Sep 20, 2023Updated 2 years ago
- ☆15May 22, 2025Updated 10 months ago
- Taxonomic classification of viruses at Order and Family level☆21Mar 1, 2023Updated 3 years ago
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆19Nov 29, 2023Updated 2 years ago
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆50Feb 26, 2026Updated last month
- Main development repository for SpreadGL☆21Sep 30, 2024Updated last year
- We developed a dual-channel model named LucaPCycle, based on the raw sequence and protein language large models, to predict whether a pro…☆34Feb 1, 2026Updated last month
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- An open database of vertebrate-virus interactions☆40Dec 16, 2025Updated 3 months ago
- A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.☆19Jul 24, 2023Updated 2 years ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆37Aug 4, 2024Updated last year
- blastn2dotplots: multiple dot-plot visualizer☆24Sep 15, 2025Updated 6 months ago
- Cenote-Taker2: Discover and Annotate Divergent Viral Contigs (Please use Cenote-Taker 3 instead)☆55Jan 19, 2024Updated 2 years ago
- ☆26Jun 26, 2025Updated 9 months ago
- A simple fastp-MultiQC nextflow pipeline☆12Feb 2, 2023Updated 3 years ago
- LucaVirus: Modeling the Evolutionary and Functional Landscape of Viruses with a Unified Genome-Protein Language Model☆63Mar 18, 2026Updated last week
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆41Feb 26, 2026Updated last month
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆44Apr 4, 2023Updated 2 years ago
- 🦠🧬 Unraveling Viral Genomes from Metagenomes☆10Oct 3, 2025Updated 5 months ago
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆171Mar 19, 2026Updated last week
- A selenium spider for GISAID☆10Apr 10, 2023Updated 2 years ago
- Discover and annotate the virome☆59Feb 11, 2026Updated last month
- viral-ngs: complete pipelines☆73Mar 21, 2026Updated last week
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆86Dec 27, 2024Updated last year
- Code for de novo discovery of viral families in virome data☆16Jun 20, 2024Updated last year
- Fast viral consensus genome reconstruction☆26Feb 5, 2026Updated last month
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Fast and flexible ORF finder☆80Jan 17, 2022Updated 4 years ago
- Prophage Activity Estimator☆32May 30, 2024Updated last year
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…☆13Feb 13, 2023Updated 3 years ago
- ☆20Dec 4, 2025Updated 3 months ago
- A community effort to create a shared resource for HMM-based RdRp discovery☆14Feb 13, 2026Updated last month
- NCBI taxonomic identifier (taxid) changelog, including taxids deletion, new adding, merge, reuse, and rank/name changes.☆28May 6, 2025Updated 10 months ago
- Accurate identification of bacteriophages from metagenomic data using Transformer☆22Nov 6, 2024Updated last year