Alternatives and similar repositories for VirID:

Users that are interested in VirID are comparing it to the libraries listed below

• GreyGuoweiChen / VirBot
  VirBot: a protein-based RNA virus detector for metagenomic data
  ☆30Updated 8 months ago
• apcamargo / taxopy
  A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers
  ☆46Updated last month
• kellylab / viral-protein-function-plm
  Viral protein family functional prediction using protein language models
  ☆18Updated 10 months ago
• snayfach / UHGV
  Unified Human Gut Virome Catalog
  ☆27Updated 8 months ago
• apcamargo / ictv-mmseqs2-protein-database
  ☆29Updated last month
• JustineCharon / RdRp-scan
  Exploring the "dusk matter" of the RNA virosphere
  ☆35Updated 3 years ago
• drboothtj / getphylo
  a python package for automated generation of phylogenetic trees from genbank files
  ☆20Updated 2 weeks ago
• XiaofangJ / PhaseFinder
  A pipeline to computationally identify invertible DNA regions and quantify their orientations.
  ☆29Updated last year
• BackofenLab / CRISPRidentify
  ☆27Updated 3 months ago
• cjneely10 / MetaSanity
  Pipeline for major biological analyses.
  ☆34Updated 2 years ago
• steineggerlab / unicore
  Universal and efficient core gene phylogeny with Foldseek and ProstT5
  ☆54Updated 2 weeks ago
• JLSteenwyk / orthohmm
  Improved Inference of Ortholog Groups using Hidden Markov Models
  ☆33Updated 3 weeks ago
• gem-pasteur / macsyfinder
  MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.
  ☆59Updated 3 months ago
• EBI-Metagenomics / mettannotator
  ☆68Updated 3 weeks ago
• NeLLi-team / gvclass
  ☆13Updated 2 months ago
• dimiboeckaerts / PhageRBPdetection
  Detection of phage RBPs based on protein domains and machine learning
  ☆22Updated last month
• rcedgar / palmscan
  ☆25Updated last year
• shoichisakaguchi / NeoRdRp
  ☆20Updated 10 months ago
• adamhockenberry / bacphlip
  A python library for predicting phage lifestyle based on genome sequence
  ☆36Updated last year
• ChengPENG-wolf / ViraLM
  Virus Identification
  ☆18Updated 2 months ago
• PAiewsakun / GRAViTy
  ☆17Updated 2 years ago
• martin-steinegger / kraken-protocol
  Metagenome analysis using the Kraken software suite
  ☆31Updated 2 years ago
• Stephane-S / Simplot_PlusPlus
  ☆32Updated last year
• Finn-Lab / SanntiS
  SMBGC Annotation using Neural Networks Trained on Interpro Signatures
  ☆26Updated 3 weeks ago
• apcamargo / prodigal-gv
  A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes
  ☆35Updated last year
• Kalan-Lab / lsaBGC
  lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters
  ☆37Updated this week
• nselem / corason
  Bioinformatic Tools for study Evolution of metabolic diversity
  ☆32Updated last year
• zreitz / multismash
  A workflow and scripts for large-scale antiSMASH analyses
  ☆39Updated 3 months ago
• Arcadia-Science / 2023-nr-clustering
  Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.
  ☆23Updated last year
• dengzac / contig-extender
  ☆22Updated last year