zy-optimistic / GAEPLinks
A genome assembly assessment pipeline.
☆37Updated last year
Alternatives and similar repositories for GAEP
Users that are interested in GAEP are comparing it to the libraries listed below
Sorting:
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated 2 years ago
- ☆30Updated 3 months ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- ☆21Updated 11 months ago
- ☆40Updated 2 years ago
- Dynamic Elongation of a Genome Assembly Path☆21Updated last year
- ☆27Updated 3 months ago
- ☆30Updated 6 months ago
- ☆24Updated last year
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆30Updated 5 months ago
- Toolkit for evolutionary analyses of linkage groups☆32Updated 11 months ago
- Multi-genome synteny block visualization tool☆42Updated 5 months ago
- This is a method to find telomeres and centromeres in plants.☆41Updated 2 years ago
- use long sequenced reads to close gaps in assemblies☆37Updated 6 years ago
- A tool for evaluating long-read de novo assembly results☆36Updated 10 months ago
- Centromics: visualing centromeres with multiple omics data☆23Updated 4 months ago
- ☆28Updated last year
- A shiny application to visualize MCscan result☆37Updated 2 years ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆31Updated 6 months ago
- Tool for globally phasing diploid assembly graphs with orthogonal data☆40Updated 7 months ago
- ☆28Updated 3 years ago
- Genome Annotation Pipeline☆36Updated 10 months ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆36Updated 5 months ago
- A tool for quick and accurate calculation of syntenic diversity.☆39Updated 5 months ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆33Updated 9 months ago
- Reconstruction of ancestral genome maps☆16Updated 7 years ago
- ☆41Updated 2 years ago
- Domain based annotation of transposable elements☆19Updated 2 months ago
- Draw a dot plot from a paf alignment☆30Updated 3 months ago
- HiCAT new project☆28Updated last month