zy-optimistic / GAEPLinks
A genome assembly assessment pipeline.
☆37Updated 2 years ago
Alternatives and similar repositories for GAEP
Users that are interested in GAEP are comparing it to the libraries listed below
Sorting:
- ☆21Updated last year
- ☆32Updated 8 months ago
- ☆30Updated 8 months ago
- Dynamic Elongation of a Genome Assembly Path☆22Updated last year
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br …☆32Updated last month
- ☆24Updated 3 weeks ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 9 months ago
- ☆31Updated 11 months ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆35Updated 3 years ago
- HELIANO is a software for detection and classification of Helitron-like elements.☆31Updated 6 months ago
- Centromics: visualing centromeres with multiple omics data☆24Updated 9 months ago
- ☆26Updated 3 years ago
- HiCAT new project☆29Updated 6 months ago
- Draw a dot plot from a paf alignment☆35Updated 2 months ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆38Updated 2 years ago
- ☆29Updated last year
- Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…☆17Updated last year
- ☆41Updated 2 years ago
- Multi-genome synteny block visualization tool☆50Updated last month
- Centromics: visualing centromeres with multiple omics data☆20Updated last year
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 3 years ago
- Toolkit for evolutionary analyses of linkage groups☆32Updated last year
- An Example of Subgenome Phasing for Complex Allopolyploidy☆13Updated last month
- Automated pipeline for running CoalHMM☆13Updated 2 years ago
- This is a method to find telomeres and centromeres in plants.☆42Updated 2 years ago
- ☆28Updated 3 years ago
- Robust identification of orthologous Synteny with the Orthology Index☆35Updated last month
- A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method☆10Updated 9 months ago
- ☆40Updated 4 months ago
- ☆44Updated last year