zy-optimistic / GAEPLinks
A genome assembly assessment pipeline.
☆38Updated 2 years ago
Alternatives and similar repositories for GAEP
Users that are interested in GAEP are comparing it to the libraries listed below
Sorting:
- HELIANO is a software for detection and classification of Helitron-like elements.☆32Updated 7 months ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆38Updated 2 years ago
- ☆33Updated 10 months ago
- ☆32Updated last year
- ☆24Updated 2 months ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆36Updated 3 years ago
- Toolkit for evolutionary analyses of linkage groups☆33Updated last year
- ☆31Updated 9 months ago
- ☆21Updated last year
- ☆29Updated 3 weeks ago
- Multi-genome synteny block visualization tool☆52Updated last week
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 11 months ago
- ☆41Updated 2 years ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆33Updated last year
- ☆29Updated 3 years ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆34Updated 2 months ago
- a Semi-automated pipeline for assembling T2T genome☆25Updated 3 months ago
- Dynamic Elongation of a Genome Assembly Path☆25Updated last month
- This is a method to find telomeres and centromeres in plants.☆42Updated 2 years ago
- Draw a dot plot from a paf alignment☆37Updated 4 months ago
- A shiny application to visualize MCscan result☆38Updated 3 years ago
- Centromics: visualing centromeres with multiple omics data☆25Updated 10 months ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 3 years ago
- Robust identification of orthologous Synteny with the Orthology Index☆37Updated last week
- Centromics: visualing centromeres with multiple omics data☆20Updated 2 years ago
- Genome alignment and synteny plots☆33Updated 2 years ago
- Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…☆17Updated last year
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆50Updated last month
- A tool for quick and accurate calculation of syntenic diversity.☆42Updated 3 months ago
- Genome Annotation Pipeline☆42Updated last year