A genome assembly assessment pipeline.
☆39Jun 5, 2026Updated 4 months ago
Alternatives and similar repositories for GAEP
Users that are interested in GAEP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆30Jul 16, 2022Updated 4 years ago
- ☆15Jan 19, 2022Updated 4 years ago
- Centromics: visualing centromeres with multiple omics data☆21Jan 18, 2024Updated 2 years ago
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆39Mar 5, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Some components that speed up and reduce resource cost for original ALLHiC☆15Jun 21, 2025Updated last year
- ☆36Jun 24, 2026Updated 4 months ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆99Dec 3, 2025Updated 10 months ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆23Jul 26, 2023Updated 3 years ago
- A simple script to run an alignment with nucmer and visualise its results.☆10Apr 17, 2023Updated 3 years ago
- ☆42May 19, 2025Updated last year
- SINE annotation tool for plant genomes☆19Jan 21, 2024Updated 2 years ago
- Ploidy agnostic phasing pipeline and algorithm☆51Jan 3, 2024Updated 2 years ago
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆17Sep 17, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A software for gap filling in genome assemblies☆10Aug 12, 2022Updated 4 years ago
- CATG (Collinearity-based Assembly correcTor GUI) is a tool that can correct genome assembly with collinearity and generate tour files for…☆18Jan 24, 2026Updated 9 months ago
- EndHic is a fast and easy-to-use Hi-C scaffolding tool, using the Hi-C links from contig end regions instead of whole contig regions to a…☆26Mar 11, 2023Updated 3 years ago
- A program for assessing the T2T genome continuity and completeness☆98Oct 13, 2026Updated 2 weeks ago
- An ultra-fast gzip file tools☆29Jun 23, 2026Updated 4 months ago
- Long-reads Gap-free Chromosome-scale Assembler☆79Mar 21, 2023Updated 3 years ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆16Apr 22, 2024Updated 2 years ago
- BITACORA: A Bioinformatics tool for gene family annotation☆58Dec 10, 2025Updated 10 months ago
- Linear-time de novo Long Read Assembler☆43Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆13Nov 6, 2025Updated 11 months ago
- Centromics: visualing centromeres with multiple omics data☆28Mar 4, 2025Updated last year
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆77Jun 4, 2026Updated 4 months ago
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆21Jul 13, 2020Updated 6 years ago
- A genome completeness evaluation tool based on miniprot☆270Oct 7, 2026Updated 3 weeks ago
- k-mer based assembly evaluation☆357Jul 6, 2026Updated 3 months ago
- a fork of the gap-closing pipeline PBJelly☆15Jan 7, 2019Updated 7 years ago
- Software GMATA for SSR mining, marker designing, genotyping, plot etc.☆18Oct 6, 2025Updated last year
- ☆16Apr 3, 2023Updated 3 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆28Mar 23, 2024Updated 2 years ago
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated 2 years ago
- Phylogenomic species tree inference under gene duplication and loss☆13Sep 20, 2026Updated last month
- A pipeline used to identify different modes of duplicated gene pairs☆127Jul 22, 2025Updated last year
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆117Sep 2, 2025Updated last year
- A shiny application to visualize MCscan result☆37Jun 26, 2026Updated 4 months ago
- SRY: an effective method for sorting long-read of sex-limited (Y or W) chromosome.☆20Aug 1, 2023Updated 3 years ago