A shiny application to visualize MCscan result
☆37Mar 8, 2026Updated last month
Alternatives and similar repositories for ShinySyn
Users that are interested in ShinySyn are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12Jun 12, 2023Updated 2 years ago
- ☆30Mar 4, 2022Updated 4 years ago
- Genome alignment and synteny plots☆34Mar 24, 2026Updated last month
- A genome assembly assessment pipeline.☆38Nov 20, 2023Updated 2 years ago
- Gennome annotation scripts for the crickets Gryllus bimaculatus and Laupala kohalensis.☆14Feb 28, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- GeneMiner: a tool for extracting phylogenetic markers from next-generation sequencing data☆12Feb 22, 2024Updated 2 years ago
- A tool for performing collinearity-incorporating homology inference☆33Oct 7, 2023Updated 2 years ago
- ☆19Apr 24, 2022Updated 4 years ago
- A program for assessing the T2T genome continuity and completeness☆95Feb 28, 2026Updated 2 months ago
- PhyloForge: Unifying micro and macro evolution with comprehensive genomic signals☆10May 17, 2024Updated last year
- Custom scripts for monotreme genome project☆19Jan 12, 2021Updated 5 years ago
- ☆31Mar 3, 2026Updated 2 months ago
- calling SVs from Blasr contig level alignments☆54Mar 9, 2018Updated 8 years ago
- Genome Contact Map Explorer - gcMapExplorer. Visit:☆21Jan 23, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- Reconstruction of ancestral genome maps☆16Mar 29, 2018Updated 8 years ago
- ☆15Aug 6, 2025Updated 8 months ago
- Gene Family Annotation Workflow☆12Mar 26, 2024Updated 2 years ago
- Long-reads Gap-free Chromosome-scale Assembler☆79Mar 21, 2023Updated 3 years ago
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆42Feb 15, 2025Updated last year
- Federating genomes with love (and synteny derived from functional annotations)☆46Mar 20, 2026Updated last month
- Tool to plot synteny and structural rearrangements between genomes☆344Apr 7, 2025Updated last year
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆45Jul 23, 2025Updated 9 months ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆85May 25, 2021Updated 4 years ago
- The complete sequence of a Chinese individual☆12Oct 8, 2024Updated last year
- Synteny and Rearrangement Identifier☆463Mar 17, 2026Updated last month
- B73Ab10 genome assembly methods☆16Jan 21, 2022Updated 4 years ago
- Scripts for Shi et al. (2024). The suer-pangenome of Populus unveils genomic facets for its adaptation and diversification in widespread …☆18Apr 1, 2024Updated 2 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Mar 5, 2018Updated 8 years ago
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆27May 24, 2021Updated 4 years ago
- Workflow for Building Microsynteny Networks☆61Jul 30, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆13Nov 15, 2017Updated 8 years ago
- Long Read Based SV Calling Tools Analysis☆14Mar 22, 2024Updated 2 years ago
- Script to help assessing the evolutionary history of a TE family☆16Sep 5, 2019Updated 6 years ago
- ☆15Aug 22, 2023Updated 2 years ago
- Dynamic Elongation of a Genome Assembly Path☆25Updated this week
- Whole organelle genome-wide alignment construction method, which ultilizes BLAST tool, to facilitate phylogeny analysis☆15Aug 27, 2023Updated 2 years ago
- parallelLastz: Running Lastz in parallel☆18Sep 13, 2024Updated last year