obenno / ShinySyn
A shiny application to visualize MCscan result
☆36Updated 2 years ago
Alternatives and similar repositories for ShinySyn:
Users that are interested in ShinySyn are comparing it to the libraries listed below
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆33Updated 2 months ago
- Genome Annotation Pipeline☆35Updated 8 months ago
- A genome assembly assessment pipeline.☆37Updated last year
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- ☆32Updated 4 years ago
- Chromosome-level synteny plotting using orthologous regions☆29Updated 7 months ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆33Updated 2 years ago
- ☆40Updated last year
- ☆28Updated last year
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆26Updated 2 years ago
- BITACORA: A Bioinformatics tool for gene family annotation☆43Updated last year
- Computational Analysis of Gene Expression Evolution☆40Updated 3 weeks ago
- ☆25Updated 2 months ago
- Plant genome assembly and annotation pipeline using snakemake☆44Updated last year
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆16Updated last year
- R package to draw syntenic plots in 3 different styles☆40Updated last year
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated 2 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆55Updated 2 years ago
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆20Updated 10 months ago
- use long sequenced reads to close gaps in assemblies☆37Updated 6 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆25Updated last month
- ☆29Updated 4 months ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆30Updated 3 months ago
- A tool for evaluate long-read de novo assembly results☆46Updated 8 months ago
- Multi-genome synteny block visualization tool☆36Updated 3 months ago
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆38Updated 7 months ago
- read and analyse RepeatMasker output☆24Updated last year
- ☆43Updated 8 years ago
- ☆9Updated 4 years ago